PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G20660.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LSD
Protein Properties Length: 60aa    MW: 6279.26 Da    PI: 9.2382
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G20660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD133.76e-11117925
          zf-LSD1  9 sYPrGApsVRCalCdtV 25
                     +YP+GApsV+Ca+C+++
  ORUFI12G20660.1  1 MYPYGAPSVKCAICNFI 17
                     9**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010536.7E-6118IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-8117IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MYPYGAPSVK CAICNFITNT GPTTQSQNVT VVVENPMTVD AKGKLVSNVV VGVTTGGKKY
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118371e-53AK111837.1 Oryza sativa Japonica Group cDNA clone:J023139G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620418.12e-29protein LOL2
SwissprotQ2QMB32e-30LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0E0JCA74e-34A0A0E0JCA7_ORYNI; Uncharacterized protein
TrEMBLA0A0E0RJV82e-34A0A0E0RJV8_ORYRU; Uncharacterized protein
TrEMBLA0A0E0RJV94e-34A0A0E0RJV9_ORYRU; Uncharacterized protein
STRINGORUFI12G20660.26e-35(Oryza rufipogon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-07LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]