PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G21090.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TCP
Protein Properties Length: 221aa    MW: 23441.6 Da    PI: 10.9814
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G21090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP83.84.3e-2643136185
              TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa.......sec...eaesssssasn 84 
                      aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+i+  lqq ++a  ++    +s++       + +    ++   s++++
  ORUFI12G21090.1  43 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIDKPLQQQQQATLAYYAAAQSAHmaapmsfE-VmamPPHLAFSQEQQ 135
                      689*******************************************************99999995555533333320.133222222222222 PP

              TCP  85 s 85 
                      +
  ORUFI12G21090.1 136 Q 136
                      2 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2345137IPR005333Transcription factor, TCP
PROSITE profilePS5136924.57846104IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEEVVVGGKE RKRPRGALVG VGGGGASAAT AAAWRTSRVA RAAAGGKDRH SKVVTSRGLR  60
DRRVRLSVPT AIAFYDIQDR LGVDQPSKAI DKPLQQQQQA TLAYYAAAQS AHMAAPMSFE  120
VMAMPPHLAF SQEQQQHATV AAFDRGTLQS NASLWPPPPQ PPPSQHPFLL QRFAAAPAEV  180
AGLPFFLAGG VGGAAAAAPA ATTNGGERRL QLWDFKEERK T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-155191141Putative transcription factor PCF6
5zkt_B5e-155191141Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0718080.0AB071808.1 Oryza sativa Japonica Group mRNA for transcription factor PCF8, partial cds.
GenBankAK1068300.0AK106830.1 Oryza sativa Japonica Group cDNA clone:002-116-F07, full insert sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004570.0BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877606.12e-51transcription factor PCF8
SwissprotA2ZMR99e-54PCF8_ORYSI; Transcription factor PCF8
TrEMBLA0A0E0RK221e-156A0A0E0RK22_ORYRU; Uncharacterized protein
STRINGORUFI12G21090.11e-157(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.17e-22plastid transcription factor 1