PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI12G21970.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 375aa    MW: 41331 Da    PI: 7.6376
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI12G21970.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM148.72.9e-46351892128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................kvkaeekew.yfFskrdkkyatgkrknr 76 
                       pGfrFhPtd+elv +yL++kve+k++++ ++ike+diyk++PwdLpk                  +++a eke+ yfF+ r +ky+++ r+nr
  ORUFI12G21970.1  35 FPGFRFHPTDQELVGFYLTRKVEKKPFSI-DIIKEIDIYKHDPWDLPKvshgavalqgsssssslsTAAAAEKECgYFFCLRGRKYRNSIRPNR 127
                      69***************************.99***************7789***9999999888764445677888****************** PP

              NAM  77 atksgyWkatgkdkevlsk..........kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +t sg+Wkatg dk+++s+           g  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  ORUFI12G21970.1 128 VTGSGFWKATGIDKPIYSSslaaaaaaagAGDCIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 189
                      ******************877666655554455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100547.84634214IPR003441NAC domain
SuperFamilySSF1019411.57E-4734214IPR003441NAC domain
PfamPF023657.1E-2336189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEEEKRLERI IKEIDSPISP GGGAALLAED DDLVFPGFRF HPTDQELVGF YLTRKVEKKP  60
FSIDIIKEID IYKHDPWDLP KVSHGAVALQ GSSSSSSLST AAAAEKECGY FFCLRGRKYR  120
NSIRPNRVTG SGFWKATGID KPIYSSSLAA AAAAAGAGDC IGLKKSLVYY RGSAGKGTKT  180
DWMMHEFRLP SSISDSDHLQ DASETWTICR IFKRSMTYTK GRAAAAAASM NKRISHELQH  240
IHHHQQQQFY YHEVVHDGHG HHHRRHLQHY AGSASMAAAA ANIVDVIDHS SDAETTTRSH  300
SHSQSHLVAD IRHRQSPFML DFHAGTASSS SSTAAGWSEV MSFSRDGGSS SGSSWDELGR  360
IMDISTNSAN NNYYL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-433621419165NO APICAL MERISTEM PROTEIN
1ut4_B3e-433621419165NO APICAL MERISTEM PROTEIN
1ut7_A3e-433621419165NO APICAL MERISTEM PROTEIN
1ut7_B3e-433621419165NO APICAL MERISTEM PROTEIN
4dul_A3e-433621419165NAC domain-containing protein 19
4dul_B3e-433621419165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139050.0AL713905.6 Oryza sativa chromosome 12, . BAC OJ1584_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619497.10.0NAC domain-containing protein 41 isoform X2
SwissprotQ9SK557e-75NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A0E0RKD00.0A0A0E0RKD0_ORYRU; Uncharacterized protein
TrEMBLQ2QLR90.0Q2QLR9_ORYSJ; No apical meristem protein
STRINGORUFI12G21970.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-73NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]