PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00030A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27560.3 Da    PI: 9.0199
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00030AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.58.6e-14959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               k+ien +nrqvtfskRr g          LCda++ v ifs +gk+yeyss
  Oropetium_20150105_00030A  9 KKIENPTNRQVTFSKRRMGXXXXXXXXXXLCDAQIGVTIFSGSGKMYEYSS 59
                               68***********************************************96 PP
2K-box50.49.8e-18861601589
                      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                ++   e++++k+e ++Lq    +++GedL+ Lsl +  +LeqqLe sl k+R +K+ell +q+ e++++e   +e
  Oropetium_20150105_00030A  86 QKIIGEMTRMKDERNKLQIMMSQYMGEDLNLLSLHHVTSLEQQLELSLYKVRLRKQELLDQQLIEMRHREMHDSE 160
                                666779***************************************************************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.735161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-20160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.8E-20278IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-20323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-121057IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-203859IPR002100Transcription factor, MADS-box
PfamPF014864.4E-1482159IPR002487Transcription factor, K-box
PROSITE profilePS5129711.45285214IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKVELKK IENPTNRQVT FSKRRMGXXX XXXXXXXLCD AQIGVTIFSG SGKMYEYSSP  60
PWRIANIFDR YLKAPSTRFD EMDIQQKIIG EMTRMKDERN KLQIMMSQYM GEDLNLLSLH  120
HVTSLEQQLE LSLYKVRLRK QELLDQQLIE MRHREMHDSE VQSNSLCLMV RWWRTPKPFP  180
WWDVGGSQQL FVHDVEQSVT ALQLLPQLGE YKLQPLQPNL QEANLQSYVL RLW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00030A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822905.11e-108MADS-box transcription factor 31-like isoform X2
SwissprotQ84NC25e-76MAD31_ORYSJ; MADS-box transcription factor 31
TrEMBLA0A0E0KV531e-111A0A0E0KV53_ORYPU; Uncharacterized protein
STRINGPavir.Gb00526.1.p1e-111(Panicum virgatum)
STRINGOPUNC04G22650.21e-112(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Schilling S, et al.
    Non-canonical structure, function and phylogeny of the Bsister MADS-box gene OsMADS30 of rice (Oryza sativa).
    Plant J., 2015. 84(6): p. 1059-72
    [PMID:26473514]