PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00087A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C2H2
Protein Properties Length: 161aa    MW: 17424.3 Da    PI: 8.4908
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00087AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.000572345123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               ++Cp C+  F+++  L  H++ H
  Oropetium_20150105_00087A 23 HECPFCKHGFTTPQALGGHMNIH 45
                               79*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.41E-52149No hitNo description
PROSITE profilePS501579.6192350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802547IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKRGGGSKKS SKAATSESSR PYHECPFCKH GFTTPQALGG HMNIHRHDRA SSRRPAGRXX  60
XXXXXXXXXX MPMDSSSFAA TYYYDSGASA AAGAMSYYGT ATQMTEPNLF GAAGTTHHDH  120
DLRLGLGSCR VPGEWELPDG GEAERSLDLE LRLGRHPGWQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00087A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.14e-10C2H2 family protein