PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00107A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family E2F/DP
Protein Properties Length: 357aa    MW: 38026.4 Da    PI: 8.8908
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00107AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.63.9e-27132218371
                    E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkek 64 
                                +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k
  Oropetium_20150105_00107A 132 NRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpnnsidspdpdnanaqqyDEKNIRRRVYDALNVLMAMDIISK-DK 211
                                689*******...*****999************************************************************.** PP

                    E2F_TDP  65 neirwkg 71 
                                +ei+wkg
  Oropetium_20150105_00107A 212 KEIQWKG 218
                                *****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.3E-45126224IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.7E-38130218IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.5E-25133218IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.17E-20133219IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.08E-32223311IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.23E-31225311No hitNo description
SMARTSM011383.4E-51225354IPR014889Transcription factor DP, C-terminal
PfamPF087814.2E-29226311IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVSGVVNVPA EDGGAPAVQR ALPPVRVRAS SGTPTPSGTA HSASTSGGSA GSPSSRSEQQ  60
APDGAAKGAA MSAAGPSASA SASASASTPV SESTFLRLNT LDINGDDAPS SQVPTSKKKK  120
RGSRAVGPDK GNRGLRQFSM KVCEKVESKG RTTYNEVADE LVAEFSDPNN SIDSPDPDNA  180
NAQQYDEKNI RRRVYDALNV LMAMDIISKD KKEIQWKGLP RTSISDVEEL KTELVGLKGR  240
IEKKSAYLQE LQDQYVGLQN LIRRNEQLYG SGDTPSGGVA LPFILVQTRP HATVEVEISE  300
DMQLVHFDFN RGEGTSVPNI YRHQLQHPGR PNNGTVRLPS SPPIPGILKG RVKHEH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-34124223193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00107A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468492.10.0transcription factor-like protein DPB
SwissprotQ9FNY21e-123DPB_ARATH; Transcription factor-like protein DPB
TrEMBLC5WXV10.0C5WXV1_SORBI; Uncharacterized protein
STRINGSb01g046810.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-115Transcription factor DP