PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00226A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 80aa    MW: 9210.45 Da    PI: 11.1129
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00226AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.94.7e-0513401544
                               HHHHHHHHHHCTSCCC...TTS-STCHHHH CS
                        HLH 15 riNsafeeLrellPkaskapskKlsKaeiL 44
                               +iN+ +++L++llP++s  + +  + + +L
  Oropetium_20150105_00226A 13 EINELISKLQSLLPESS--RRRNANRVRTL 40
                               7**************72..54448888887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MSGRRGGRIS DEEINELISK LQSLLPESSR RRNANRVRTL FWVLACFDLP NVYDHYACVR  60
TAPDSISSVL QQNRRRRSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00226A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-