PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_00304A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

Protein Properties

Length: 241aa MW: 27074.9 Da PI: 8.9077

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_00304A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	50.9	2.9e-16	140	230	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k++++s+v + +l lp +f+++++ k ++ +tl de+ ++++ ++ ++++ l++GW +F+ ++g+++gD vF+l Oropetium_20150105_00304A 140 FVKAMLHSHVVRGFWLGLPSHFCDTYMPK--KDSIVTLVDEKDEEFDTNY--LAYKKG--LSGGWAGFALSHGIRDGDATVFQL 217 89**********************755..4458***********..555555..9********************* PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 ++ ++f +v+++r+ Oropetium_20150105_00304A 218 IKPTTF--KVHIIRA 230 986777..9999885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.5E-19	131	230	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.37E-22	133	230	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.09E-24	138	229	No hit	No description
PROSITE profile	PS50863	11.688	140	231	IPR003340	B3 DNA binding domain
SMART	SM01019	4.6E-17	140	231	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.5E-14	140	230	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence Send to blast
MAAVAEEQEM EMSPYEAARE RRVQENKRKM EALNLHHLSA AIKMAPKTPS PMKQKRRRII 60 ETAVVPPSPA RRSRRLAQLP EISYAEVAPH SSERIARTPR KPTDSIYSAR YGSISMKARL 120 EATRKAEELE SQLDPEVPAF VKAMLHSHVV RGFWLGLPSH FCDTYMPKKD SIVTLVDEKD 180 EEFDTNYLAY KKGLSGGWAG FALSHGIRDG DATVFQLIKP TTFKVHIIRA ASDDDDEVAE 240 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	58	KRRRI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_00304A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001345448.1	1e-143	B3 domain-containing protein
Swissprot	Q10QS9	1e-135	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A1E5URN1	1e-143	A0A1E5URN1_9POAL; B3 domain-containing protein
STRING	Si037266m	1e-139	(Setaria italica)
STRING	Sb01g044910.1	1e-139	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	2e-49	B3 family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_00304A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]