PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00314A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 28928 Da    PI: 9.8399
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00314AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.13e-251261251
                               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  Oropetium_20150105_00314A 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61
                               89********************************************9986 PP
2K-box43.61.3e-15941632089
                      K-box  20 elakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                                  a+L++e+ +   ++R++ Ge+L++L++++Lq+Le+ Le++l+++ ++K++ ++++i+ l +k k++ +
  Oropetium_20150105_00314A  94 ACARLREELAEASLKLRQMRGEELHRLNVQQLQELEKSLESGLSSVLKTKSQKIIDEINGLERKAKNATD 163
                                67899999999999**************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-33362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.137363IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-29577IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-24525IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
CDDcd002653.26E-37576No hitNo description
PfamPF003192.0E-241259IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-242540IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-244061IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.40188173IPR002487Transcription factor, K-box
PfamPF014865.3E-1296162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA  60
SSSMKQIIDR YDSNSKTLQR SEKEPPKPVE DDGACARLRE ELAEASLKLR QMRGEELHRL  120
NVQQLQELEK SLESGLSSVL KTKSQKIIDE INGLERKAKN ATDRGEFKAK GASKVPPALL  180
CVALRSSFVF SESNYLNHPK LQVSRMARLE MQLGADSEIV LEEGQSSESV TNTSYPRAPV  240
DNGDSSDTSL RLGLSLFASK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-18571369MEF2C
5f28_B6e-18571369MEF2C
5f28_C6e-18571369MEF2C
5f28_D6e-18571369MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00314A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307340.11e-118MADS-box transcription factor 47-like isoform X1
RefseqXP_021307341.11e-118MADS-box transcription factor 47-like isoform X1
SwissprotQ5K4R01e-110MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLA0A1D6JR011e-118A0A1D6JR01_MAIZE; MADS-transcription factor 68
STRINGPavir.Ia04527.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]