PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00339A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family CAMTA
Protein Properties Length: 693aa    MW: 77282.3 Da    PI: 7.6406
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00339AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1106.32e-332093375
                       CG-1  3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75
                               ke ++rwl++ ei++iL+n+++++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+he+LK 
  Oropetium_20150105_00339A 20 KEaQNRWLRPAEICEILKNYRNFRIAPEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHERLKG 93
                               5559********************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143750.66115145IPR005559CG-1 DNA-binding domain
SMARTSM010763.9E-3318140IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-282195IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.7E-9313399IPR013783Immunoglobulin-like fold
PfamPF018336.5E-10313391IPR002909IPT domain
CDDcd001028.62E-5313400No hitNo description
SuperFamilySSF812964.98E-19314398IPR014756Immunoglobulin E-set
SuperFamilySSF484031.71E-10426482IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-9429481IPR020683Ankyrin repeat-containing domain
CDDcd002041.46E-8433482No hitNo description
PROSITE profilePS500888.79435467IPR002110Ankyrin repeat
PROSITE profilePS5029712.992435477IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500967.62568592IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MAEERRYAIA PQLDIQQILK EAQNRWLRPA EICEILKNYR NFRIAPEPPN RPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHER LKGGKSSSRI RHDDTLQAAR TDSPLSHLPS  120
QTTEGESSLS GQASEYEETE SGNQHGLLAT TANTSVYSHG EENRSVFHNE SGQIAFNEAD  180
SQLNLSSLNG MMKPYSEIHQ MSQPQLSGGL GGSFATEDCS QQNERSLEEA INYPLLKTSS  240
SLSDILKDSF KKSDSFTRWM SRELGEVNDS QITSSSGVNW NSEDADKIIE ATSRDQLDQF  300
TVGPVLAQDQ LFSISDFSPS WTYAGSKTRV IITGRFLNPN EVKRCKWSCM FGEVEVPAQI  360
VADGTLRCYS PPHKPGKVPF YMTCSNRLAC SEVREFEFQP INSQYMDAPS PHGATNKTYL  420
QIRIDGKGPS VLDEEGQGVL HLAAALGYDW AIRPAITAGV NINFRDAHGW TALHWAAFCG  480
RYVSTVAFET MGRNTSEISG LPSIGAVSES RLSSLAGEGL QSGSMGDSLG AVRNAAQAAA  540
RIYQVFRVQS FQRKQTVQYG NDSGEISDEH ALSLLSAHVR GHQVRKHYRK IVWSVGIVEK  600
VILRWRRRGA GLRGFRSTES AMESTSYSGA DFIQNKPAED DYDFLQEGRK QTEERLQKAL  660
ARVKSMAQYP DARDQYQRIL SAVTKLQESQ VL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00339A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614396.10.0calmodulin-binding transcription activator 3 isoform X1
SwissprotQ6NPP49e-78CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0D3HD120.0A0A0D3HD12_9ORYZ; Uncharacterized protein
TrEMBLB8BGI50.0B8BGI5_ORYSI; Uncharacterized protein
STRINGORGLA10G0066800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.22e-66Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]