PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00552A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ARR-B
Protein Properties Length: 635aa    MW: 67640.5 Da    PI: 6.8354
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00552AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like90.12e-28148201155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                kpr++W+ eLH++Fv+av++L G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Oropetium_20150105_00552A 148 KPRVVWSVELHQQFVNAVNHL-GIDKAVPKKILELMNVPGLTRENVASHLQKFRL 201
                                79*******************.********************************8 PP
2Response_reg50.61e-1767343109
                                H..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
               Response_reg  43 d..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                +  +D+i+ D+ mp+mdG++ll+     e++lp+i+++a ++ +++ + +k Ga d+l Kp+ +eel++
  Oropetium_20150105_00552A   6 RrgFDVIISDVHMPDMDGFRLLELVGL-EMDLPVIMMSADASTNTVMKGIKHGACDYLIKPVRMEELRN 73 
                                3359******************87754.558************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.32E-18178No hitNo description
PIRSFPIRSF0363921.3E-1511617IPR017053Response regulator B-type, plant
PROSITE profilePS5011032.206179IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23008.5E-282103No hitNo description
SuperFamilySSF521723.7E-23387IPR011006CheY-like superfamily
PfamPF000726.7E-15774IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466898.24E-20145205IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-30145206IPR009057Homeodomain-like
PROSITE profilePS5129411.674145204IPR017930Myb domain
TIGRFAMsTIGR015572.7E-25148201IPR006447Myb domain, plants
PfamPF002497.0E-7150199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MLRENRRGFD VIISDVHMPD MDGFRLLELV GLEMDLPVIM MSADASTNTV MKGIKHGACD  60
YLIKPVRMEE LRNIWQHVVR KKWSGNKDHE HSDSIDDTDR NRTTNNDNEY ASSANDVGDG  120
NWKSQKKKRD KEEDEGDENG DPSSTSKKPR VVWSVELHQQ FVNAVNHLGI DKAVPKKILE  180
LMNVPGLTRE NVASHLQKFR LYLKRIAQHH AGIAHPFVPS ASSAKVAPLG GFELQALAAS  240
GQIPPQALAA LQDELLGRPT SSLALPGRDQ SSLRLASIKG NKPPGEREIA FGQPMYKCAN  300
NAYGAFPPTS STVGGMPPFA AWPSNKHSMT DSGHTLGSLN NSQNSNMLLQ ELQQQPDALL  360
SGTLHSIDVK PSGLVMPSQA LSTFPASDGL SPNQNPLVMP PQSSSFLGAV PSSMKHEPLL  420
TSSQPSSSLL GGIDMVSQAS TSQPLITTHG GNLPGLMNRS SNALSSQGIS NFQGGNNPYV  480
VANQNAVGVG SKSQGVLKTE STDSLRHNYG FVGGSSSMDS GLLSQSKSPQ FGLLQSPDDV  540
GSWSSLQNID SYGGTLGPGQ SGSTSSNFQS SNVALGKLSD QGRGRNHGFV GKGTCIPSRF  600
AVDEIESPTN NLSHSIGSSG DIGNPDIFGF SGQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-24144207164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00552A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468245.10.0two-component response regulator ORR21
RefseqXP_021306470.10.0two-component response regulator ORR21
SwissprotA2XE310.0ORR21_ORYSI; Two-component response regulator ORR21
TrEMBLA0A1E5WFP90.0A0A1E5WFP9_9POAL; Two-component response regulator ORR21 (Fragment)
STRINGSb01g042400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57963754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-92response regulator 2