PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_00600A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 227aa MW: 25630 Da PI: 6.1609

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_00600A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.6	3.9e-12	62	109	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + h +ErrRR+++ + f L +++P + +K +K+++L ++eY+k+L+ Oropetium_20150105_00600A 62 QEHVVAERRRREKMQQQFVALATVVPDL-----TKTDKISVLGSTIEYVKQLE 109 57999********************9.....9***************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.602	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-10	62	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.14E-15	63	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.0E-17	63	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.70E-10	64	113	No hit	No description
SMART	SM00353	2.1E-12	65	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MCQQEELLRM FGQHPLPGPQ QQIPDQQQYN PFSGEDWHDA IEAVHQVPAA VERRSRTHLN 60 TQEHVVAERR RREKMQQQFV ALATVVPDLT KTDKISVLGS TIEYVKQLEE KVKTLEEQST 120 RRSSNSEPGV FESMCRISSD DDASRPTSGY IPTVEASVHG DTVLLKICCR ERRGVLVMVF 180 SEVENHGLSI INTSVLPFTD SCLSITITAK AILLDYIYRT RVFNNS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	72	ERRRRE
2	68	73	RRRREK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_00600A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021316601.1	3e-86	transcription factor bHLH18
Refseq	XP_021316605.1	3e-86	transcription factor bHLH18
TrEMBL	A0A3L6SAV4	1e-87	A0A3L6SAV4_PANMI; Uncharacterized protein
STRING	EMT27133	1e-74	(Aegilops tauschii)
STRING	OB03G19470.1	1e-74	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6401	31	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-30	bHLH family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_00600A