PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00709A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NF-YC
Protein Properties Length: 254aa    MW: 27314.4 Da    PI: 5.9549
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00709AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC301.1e-094883131
                      NF-YC  1 qlksfwekq.....iekatdfknhelPlarikkilk 31
                               ql++fw++q     + +a+dfknh+lPlarikki+ 
  Oropetium_20150105_00709A 48 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMX 83
                               89*****997665555689****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.3E-56483IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDNQQLPYSS GVQPPSATGG APVPGVPGGA AGPPPVPNHH LLQQQQAQLQ AFWAYQRQEA  60
ERASASDFKN HQLPLARIKK IMXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXPGSA ALGFAAAAGA XXXXXXXXXX  180
XAGMPYYYPP MGQPAPMTMP AWHVPAWDPA WQQGGGGGDV DQSGSFGEDG QVFAAGHGGA  240
ASSFPTAPPP SSE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00709A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880430.0AB288043.1 Oryza sativa Japonica Group OsHAP5C gene for HAP5 subunit of HAP complex, complete cds.
GenBankAC1342350.0AC134235.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0030J04, complete sequence.
GenBankAC1342400.0AC134240.2 Oryza sativa Japonica Group chromosome 3 clone OSJNBb0081I10, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBankCT8365390.0CT836539.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN017G01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147992.16e-45nuclear transcription factor Y subunit C-1
RefseqXP_008675138.16e-45nuclear transcription factor Y subunit C-1 isoform X1
TrEMBLA0A317YFQ91e-43A0A317YFQ9_MAIZE; Nuclear transcription factor Y subunit C-2
TrEMBLB6SWV51e-43B6SWV5_MAIZE; Nuclear transcription factor Y subunit C-1
TrEMBLK0DFD11e-43K0DFD1_MAIZE; CA5P11 CCAAT-HAP5 type transcription factor (Fragment)
STRINGGRMZM2G089812_P012e-44(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73453551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-09nuclear factor Y, subunit C4