PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_00717A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family MYB_related
Protein Properties Length: 128aa    MW: 14153.7 Da    PI: 9.7577
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_00717AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.2e-10347344
                               SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                                W++ E +++ +a + +G++   +W+++a+ +g g+t ++++ ++
  Oropetium_20150105_00717A  3 EWSKTENQRFERALATYGSDtpgRWERVAAAVGGGKTVEDIRRHY 47
                               5*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-6153IPR001005SANT/Myb domain
PROSITE profilePS5129311.994155IPR017884SANT domain
CDDcd001675.90E-8347No hitNo description
PfamPF002495.4E-9347IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-6355IPR009057Homeodomain-like
SuperFamilySSF466896.55E-11355IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MAEWSKTENQ RFERALATYG SDTPGRWERV AAAVGGGKTV EDIRRHYALL VEEVGDIESG  60
GYDGYPTNNG SAGNGNTNNR HAHSASTALY IYVSLLQTMI RARFFLVLHA DAMFSRFRRG  120
RTNRPQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-164801185RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_00717A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313364.19e-30protein RADIALIS-like 3
TrEMBLA0A3L6TNS87e-30A0A3L6TNS8_PANMI; MYB-like transcription factor DIVARICATA
STRINGPavir.Ib01055.1.p2e-30(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-20RAD-like 6