PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_01099A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bZIP

Protein Properties

Length: 168aa MW: 17974.6 Da PI: 8.1023

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01099A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.2	1.7e-08	27	76	3	52
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 e +r r+ +NR++Ar+sR ++++ +eeL+ + L eN+a + ++ Oropetium_20150105_01099A 27 EERRRNRMTSNRLSARKSRMKRQQHVEELTALAYLLGRENEAARAGVDGA 76 567889**********************************9877766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.2E-9	25	89	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.8E-8	25	96	No hit	No description
PROSITE profile	PS50217	9.013	27	90	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.25E-7	29	83	No hit	No description
CDD	cd14702	7.03E-13	30	81	No hit	No description
PROSITE pattern	PS00036	0	33	47	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MAPQAAPAAA QHQGTPHRRA AAAVTEEERR RNRMTSNRLS ARKSRMKRQQ HVEELTALAY 60 LLGRENEAAR AGVDGALRRC RLLEQENLVL AAHARQLCAA LALSNSQLRM LGTVAGVPLD 120 VPGVPDHLMQ LYGGDCLQIP MLSWPDATVD AADVGAMLGL AGDPDLI*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01099A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022679299.1	1e-59	bZIP transcription factor 53
TrEMBL	K4ALW0	3e-58	K4ALW0_SETIT; Uncharacterized protein
STRING	Si039895m	5e-59	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12504	28	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G62420.1	2e-10	basic region/leucine zipper motif 53

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01099A