PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01172A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 205aa    MW: 22581.7 Da    PI: 8.3573
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01172AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY67.91.5e-212485259
                               --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
                       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59
                               +Dg++WrKYG K++++++fpr YYrCt++   +Cp++k+v+++ ++dp +  +tY +eH ++
  Oropetium_20150105_01172A 24 NDGHQWRKYGEKKINNTNFPRYYYRCTYKdnmNCPATKQVQQKdHSDPPLYAVTYYNEHSCN 85
                               8***************************99999*******8752679************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.6E-241185IPR003657WRKY domain
SuperFamilySSF1182901.07E-221785IPR003657WRKY domain
PROSITE profilePS5081116.5361887IPR003657WRKY domain
SMARTSM007741.5E-312386IPR003657WRKY domain
PfamPF031064.0E-252484IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAKKLFFGRK EKRMRKVDTF APHNDGHQWR KYGEKKINNT NFPRYYYRCT YKDNMNCPAT  60
KQVQQKDHSD PPLYAVTYYN EHSCNSAFLP LSPSEFQLQT SSGKAVSICF DSSAEPAAAA  120
AANASAGAGS PSSSAXXXXX XXXXXXXXXX XXXSETYPWG AGAVEQKPAS CSTECHDAFA  180
AAAAVPEEVV DAGRFGSIRF FHFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-142484968OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01172A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9539541e-179EU953954.1 Zea mays clone 1450347 WRKY55 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792602.11e-108probable WRKY transcription factor 35
TrEMBLA0A3L6TES91e-109A0A3L6TES9_PANMI; Putative WRKY transcription factor 35
STRINGPavir.Ib01500.1.p1e-107(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-19WRKY DNA-binding protein 46