PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01179A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 222aa    MW: 24304.3 Da    PI: 9.9686
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01179AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.14.4e-14164206547
                                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 
                                +r +r++kNRe+A rsR+RK+a++ eLe+k+++L++eN++L+ 
  Oropetium_20150105_01179A 164 RRKKRMIKNRESAARSRARKQAYTNELENKIAQLQEENDRLRR 206
                                799**************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.5E-7160218IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.542162206IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.13E-11164207No hitNo description
Gene3DG3DSA:1.20.5.1704.4E-13164207No hitNo description
PfamPF001704.1E-11164206IPR004827Basic-leucine zipper domain
CDDcd147075.73E-23164206No hitNo description
PROSITE patternPS000360167182IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGAKAMSSHG SGAGGAGGAA ALSRQGSVCS LTFSEVDGHL HGVNLDDLLR AAGAGNKKST  60
VDEVWRGVQQ QGGGYPPRPQ MTLEDFLCRA TDDHGWAQQQ QQQQQQFQQP RLVGHPARPV  120
PRPMGAGAGP AVVDALCHEA GLMKRGAAAA AADGCEVVER SNERRKKRMI KNRESAARSR  180
ARKQAYTNEL ENKIAQLQEE NDRLRRHKVR RLVLYYYYYY Y*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01179A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3614237e-34AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465343.25e-70ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLA0A1B6QNJ11e-68A0A1B6QNJ1_SORBI; Uncharacterized protein
STRINGSb01g036810.12e-66(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.17e-18ABA-responsive element binding protein 3