PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01198A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WOX
Protein Properties Length: 104aa    MW: 11198.3 Da    PI: 10.5751
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01198AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox48.71.3e-153998256
                               T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                   Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                               r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l     + +++V++WFqNrR ++ 
  Oropetium_20150105_01198A 39 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLerfgAVGDANVFYWFQNRRSRDQ 98
                               89*****************99************************************976 PP
2Wus_type_Homeobox105.73e-343899263
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                               +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G+++d+NVfyWFQNr++R++q
  Oropetium_20150105_01198A 38 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLERFGAVGDANVFYWFQNRRSRDQQ 99
                               589********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-81898IPR009057Homeodomain-like
PROSITE profilePS5007110.20335100IPR001356Homeobox domain
SuperFamilySSF466891.33E-123599IPR009057Homeodomain-like
SMARTSM003890.006937102IPR001356Homeobox domain
PfamPF000462.2E-133998IPR001356Homeobox domain
CDDcd000863.81E-53997No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MDGSSNSPDR QSSGGSPEER GSGGSSSGGG RGSGGEPVRS RWTPKPEQIL ILESIFNSGM  60
VNPPKDETVR IRKLLERFGA VGDANVFYWF QNRRSRDQQL SRG*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00330DAPTransfer from AT3G03660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01198A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635032e-85AK063503.1 Oryza sativa Japonica Group cDNA clone:001-116-E11, full insert sequence.
GenBankAK0732322e-85AK073232.1 Oryza sativa Japonica Group cDNA clone:J033021B15, full insert sequence.
GenBankAP0051672e-85AP005167.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0060O17.
GenBankAP0149632e-85AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankBT0877862e-85BT087786.1 Zea mays full-length cDNA clone ZM_BFb0202I23 mRNA, complete cds.
GenBankCP0126152e-85CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankEU9539122e-85EU953912.1 Zea mays clone 1449250 homeobox domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164667.12e-46WUSCHEL-related homeobox 6-like
SwissprotA2XG772e-44WOX6_ORYSI; WUSCHEL-related homeobox 6
TrEMBLA0A287P1913e-46A0A287P191_HORVV; Uncharacterized protein
TrEMBLA0A446S4U07e-46A0A446S4U0_TRITD; Uncharacterized protein
STRINGMLOC_65745.23e-46(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP107837109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.13e-34WUSCHEL related homeobox 11