PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_01403A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

G2-like

Protein Properties

Length: 285aa MW: 30657.9 Da PI: 9.3361

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01403A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7.3e-29	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr++Wt eLH++F++a+e LGG+ekAtPk+il++m+ k Lt+++vkSHLQ+YR+ Oropetium_20150105_01403A 19 PRMKWTAELHRSFLRAIECLGGQEKATPKSILRFMNAKELTISQVKSHLQMYRS 72 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-27	15	73	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.762	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.43E-16	16	72	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-24	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	2.7E-7	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MSSGGRNGAV RRYIRSKEPR MKWTAELHRS FLRAIECLGG QEKATPKSIL RFMNAKELTI 60 SQVKSHLQMY RSAKLGTGGR KGMEAQLQRK HSCAADEQGP KDFMCPPLKR AKMGTETAYK 120 GLQGSQGISE MSTAGNQYCM HDYMQAVEME WRIKQEGLRR QRDAAAAAAA TTVSSLKTVG 180 FLVQESDSFE TSSPEAHQLG HFSGFSIAAA KGKSEEPPEH CSLLLSLGLD PNCNRAMVSS 240 PSGSSCIVSV SPIRRSSSDC SGHSSGFSVA PGVSLELSLS ICGT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-16	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01403A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022683888.1	1e-115	protein PHR1-LIKE 3 isoform X2
TrEMBL	A0A368RXV3	1e-114	A0A368RXV3_SETIT; Uncharacterized protein
STRING	Pavir.Gb01051.1.p	1e-115	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	8e-26	G2-like family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01403A