PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_01570A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

WRKY

Protein Properties

Length: 2256aa MW: 241259 Da PI: 4.6183

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01570A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95	5.4e-30	242	300	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ Oropetium_20150105_01570A 242 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 300 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	32.925	236	302	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	9.4E-30	239	302	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-25	240	302	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	241	301	IPR003657	WRKY domain
Pfam	PF03106	7.0E-25	243	300	IPR003657	WRKY domain
CDD	cd06174	2.24E-9	451	646	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	1.8E-8	451	649	No hit	No description
SuperFamily	SSF103473	3.01E-18	453	667	IPR020846	Major facilitator superfamily domain
Pfam	PF00854	5.7E-36	510	738	IPR000109	Proton-dependent oligopeptide transporter family
SuperFamily	SSF103473	3.01E-18	727	949	IPR020846	Major facilitator superfamily domain
CDD	cd06174	1.12E-10	745	947	IPR020846	Major facilitator superfamily domain
Gene3D	G3DSA:1.20.1250.20	1.1E-11	747	946	No hit	No description
Pfam	PF00854	4.0E-34	809	972	IPR000109	Proton-dependent oligopeptide transporter family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006810	Biological Process	transport
GO:0016020	Cellular Component	membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005215	Molecular Function	transporter activity
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 2256 aa Download sequence Send to blast
MCDYFLQRME GDQAGGGDLA DIIRAGGAMP GNAEMPSTTA AEWQQLQGAE PMLFPPPPSS 60 SNGCGGADVF VGDPFSGLGD PFSSDYSSGA DFLDAMPDAM AKIGFDTSAA GGGGGGGGGG 120 GGGGGSGGGH QLLDMSRKPI LPRGMPMPAV GLLGPTRVLP SPLSPRAIRP YPPMGGGEMV 180 KLGITAGQMA GCAIDAAVVG MQMSSPRAAG GIKRRKNQAR KVVCIPAPTA AGGRPTGEVV 240 PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP 300 WPTQRNALAG STRNHHGKNG SSGSGSKSSQ NEKQKQQLNV KEESKDQATT TNTSTVTTTT 360 ATSTSPVAAA AAVKEEALAG SEALEGAMDT TVAVDHNNIA LMDHVFSESY KPMIPEAGQS 420 DDFFSDLAEL ESDPMSLIFS KEYMEAKPPG LIFFEVVAFY GVYLNLVVYL QDVLHGDSAS 480 NAAAVNFWAA ASYLMPVIGV AIADSWWGKY KTALVGLSMA LIGMAVITTS ATVPSLRPPP 540 CEEQSTRCAP ATFGQRAVFF TGIYLCAVGF GGAKAAIVSF GAEQFDDDDG KNAAEREGKE 600 SYFSWFYGVG NLGVLTSGTL LVWVEEEVSW GLGFGVCASF LAVAVLGLAA SAPVFRMVPP 660 AGSSPLKGVC QVLVAFAHKV NVPDDAAELY EEEHVKTPLL LERLEHTEQF KWLDKAAVSR 720 SPKIEDESLT VPLIEDKKTG SKAPAVVLGF ECLESTAFNG IGTNLVVYLE TVLHGSNVAS 780 ASNVTIWMGT SYLTPIFAAY FADTFGGNYN TILVSLLVYL LGMLLVTFSA FLPTADLCGV 840 GSSSCHPVLG AQNLAFVGLY LVAFGSGGVR AALLPFGAEQ FDDANAVDRA RKASFFSWFY 900 VCVDFGMIVS GVLIVWIQTN VSWGLGFGVA TACIALAYGG FVLATPMYKR SLPTGTPLKS 960 LAQVVVAACR KLPLRVPDDA GVLYEAHDKV DGIEEYVKQP AAVSQPARKA VVAEEEDVRR 1020 EKQGSPLPRG RRVTAKTAVV VNPGKGKDKD AEKGDARPES NREDDAPAGA VGRRGASRSS 1080 RHASVVAAPA ANAAVKKQGR SPSRAGREPA RPDDGVETED LKREADKEDA SVQGAGRRVP 1140 TRRARPAPLV ASAAQPETKV AAPDEKQGRQ PPRGRRVTAK TAVVVNPGEG KDKEAKKGDA 1200 RQESNREEDA PAVAVGRRGA SRSSRHASVV AAPAANAAVK KQGSSPSRVG REPTRPGDGV 1260 EREALKGEAD NEDAPVQGAG RRGPNRRARP APLVATAAEP EAKVAAPEEK QADPARPNDI 1320 VDEDKKLEAN NDAAPAQAVG RRGPSRRARP AQPAAAVKSA VEEELRSSLL RRVAVSIKSS 1380 APISMEAGEK DKNEDLPGNV PALGVGRRGV KRCARPEAVV SAPPEDVPAE ENAKIPHGRR 1440 GKVKSSEPDV LTGCDEEDQN SLKLENEEEG APAQAAEAEE KVPGRTTKKP APMNSTLQKV 1500 KQPVPVEAAL VRPTRVRKPT MKSAEKAEEK VPRITTKMPA PMNSTLQKGK QPEGLHETVP 1560 ELASDEACYD LENVEAAVDP QNAEQSEVII ESNLEDEAQM ENSEVLTSED EMLIQKPTMM 1620 AAANSTLHKE KQQEEPQEVV PALAFDKACY DLDSDEEAAD PQKVMINKDD MLMKVILADE 1680 PLVIDEDLME KSLEEEPPVV DEECVGNSEV MINKDDMLME VILADEPLVI DEELMEKNLE 1740 EEPPVVDDEC VGNSAAEEKE CNDKSPLEEQ QVGVEPCATL TGLEDSPVLG LLSMFAEQTI 1800 EMDEIAALHS HKRAGSCKDR LDQGMEENHH SNKEIEMDAA KEIERAPLIL RLLRALTSEE 1860 PALEGGFTGN ADHGREMQSS NSTLQGTEET TTVGAEDGLF NQEKVVAQPK TADEAITLDC 1920 SGNISSVIKE KVHNEVTISD EVTRVTLIDN GGIDRAKATL DTEELPQGSA KLDADVAGDN 1980 FQTYSVHSNE WKEVDGSKKA EMVNENPLQS VAIINEDAEN DNFQNYFVHM DGQKEVVGME 2040 KVEMVMVADK ILHSTTTRDA DAEGDVKTNS VHFGDQEEIA IAYNLQEVIM NGDVVVEKVQ 2100 ITNELQQNTA TMDEEDVADD QLETDFLLAE KQSGDITKCS DHIISALHDD STKSVSMITI 2160 TDSIVSREED VPICKNRSEA NTVEPVCKNS SEKNTDGPET LQENMGVEMT KQDADLKKLS 2220 LRKLRATLKE TLELKKRKRE PLATVDENVL KLQQY*

Sequence ? help Back to Top

Protein Sequence Length: 2256 aa Download sequence Send to blast

MCDYFLQRME GDQAGGGDLA DIIRAGGAMP GNAEMPSTTA AEWQQLQGAE PMLFPPPPSS  60
SNGCGGADVF VGDPFSGLGD PFSSDYSSGA DFLDAMPDAM AKIGFDTSAA GGGGGGGGGG  120
GGGGGSGGGH QLLDMSRKPI LPRGMPMPAV GLLGPTRVLP SPLSPRAIRP YPPMGGGEMV  180
KLGITAGQMA GCAIDAAVVG MQMSSPRAAG GIKRRKNQAR KVVCIPAPTA AGGRPTGEVV  240
PSDLWAWRKY GQKPIKGSPY PRGYYRCSSS KGCSARKQVE RSRTDPNMLV ITYTSEHNHP  300
WPTQRNALAG STRNHHGKNG SSGSGSKSSQ NEKQKQQLNV KEESKDQATT TNTSTVTTTT  360
ATSTSPVAAA AAVKEEALAG SEALEGAMDT TVAVDHNNIA LMDHVFSESY KPMIPEAGQS  420
DDFFSDLAEL ESDPMSLIFS KEYMEAKPPG LIFFEVVAFY GVYLNLVVYL QDVLHGDSAS  480
NAAAVNFWAA ASYLMPVIGV AIADSWWGKY KTALVGLSMA LIGMAVITTS ATVPSLRPPP  540
CEEQSTRCAP ATFGQRAVFF TGIYLCAVGF GGAKAAIVSF GAEQFDDDDG KNAAEREGKE  600
SYFSWFYGVG NLGVLTSGTL LVWVEEEVSW GLGFGVCASF LAVAVLGLAA SAPVFRMVPP  660
AGSSPLKGVC QVLVAFAHKV NVPDDAAELY EEEHVKTPLL LERLEHTEQF KWLDKAAVSR  720
SPKIEDESLT VPLIEDKKTG SKAPAVVLGF ECLESTAFNG IGTNLVVYLE TVLHGSNVAS  780
ASNVTIWMGT SYLTPIFAAY FADTFGGNYN TILVSLLVYL LGMLLVTFSA FLPTADLCGV  840
GSSSCHPVLG AQNLAFVGLY LVAFGSGGVR AALLPFGAEQ FDDANAVDRA RKASFFSWFY  900
VCVDFGMIVS GVLIVWIQTN VSWGLGFGVA TACIALAYGG FVLATPMYKR SLPTGTPLKS  960
LAQVVVAACR KLPLRVPDDA GVLYEAHDKV DGIEEYVKQP AAVSQPARKA VVAEEEDVRR  1020
EKQGSPLPRG RRVTAKTAVV VNPGKGKDKD AEKGDARPES NREDDAPAGA VGRRGASRSS  1080
RHASVVAAPA ANAAVKKQGR SPSRAGREPA RPDDGVETED LKREADKEDA SVQGAGRRVP  1140
TRRARPAPLV ASAAQPETKV AAPDEKQGRQ PPRGRRVTAK TAVVVNPGEG KDKEAKKGDA  1200
RQESNREEDA PAVAVGRRGA SRSSRHASVV AAPAANAAVK KQGSSPSRVG REPTRPGDGV  1260
EREALKGEAD NEDAPVQGAG RRGPNRRARP APLVATAAEP EAKVAAPEEK QADPARPNDI  1320
VDEDKKLEAN NDAAPAQAVG RRGPSRRARP AQPAAAVKSA VEEELRSSLL RRVAVSIKSS  1380
APISMEAGEK DKNEDLPGNV PALGVGRRGV KRCARPEAVV SAPPEDVPAE ENAKIPHGRR  1440
GKVKSSEPDV LTGCDEEDQN SLKLENEEEG APAQAAEAEE KVPGRTTKKP APMNSTLQKV  1500
KQPVPVEAAL VRPTRVRKPT MKSAEKAEEK VPRITTKMPA PMNSTLQKGK QPEGLHETVP  1560
ELASDEACYD LENVEAAVDP QNAEQSEVII ESNLEDEAQM ENSEVLTSED EMLIQKPTMM  1620
AAANSTLHKE KQQEEPQEVV PALAFDKACY DLDSDEEAAD PQKVMINKDD MLMKVILADE  1680
PLVIDEDLME KSLEEEPPVV DEECVGNSEV MINKDDMLME VILADEPLVI DEELMEKNLE  1740
EEPPVVDDEC VGNSAAEEKE CNDKSPLEEQ QVGVEPCATL TGLEDSPVLG LLSMFAEQTI  1800
EMDEIAALHS HKRAGSCKDR LDQGMEENHH SNKEIEMDAA KEIERAPLIL RLLRALTSEE  1860
PALEGGFTGN ADHGREMQSS NSTLQGTEET TTVGAEDGLF NQEKVVAQPK TADEAITLDC  1920
SGNISSVIKE KVHNEVTISD EVTRVTLIDN GGIDRAKATL DTEELPQGSA KLDADVAGDN  1980
FQTYSVHSNE WKEVDGSKKA EMVNENPLQS VAIINEDAEN DNFQNYFVHM DGQKEVVGME  2040
KVEMVMVADK ILHSTTTRDA DAEGDVKTNS VHFGDQEEIA IAYNLQEVIM NGDVVVEKVQ  2100
ITNELQQNTA TMDEEDVADD QLETDFLLAE KQSGDITKCS DHIISALHDD STKSVSMITI  2160
TDSIVSREED VPICKNRSEA NTVEPVCKNS SEKNTDGPET LQENMGVEMT KQDADLKKLS  2220
LRKLRATLKE TLELKKRKRE PLATVDENVL KLQQY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4oh3_A	1e-29	461	990	25	310	Nitrate transporter 1.1
4oh3_B	1e-29	461	990	25	310	Nitrate transporter 1.1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01570A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-60	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01570A