PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01578A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 459aa    MW: 50882.8 Da    PI: 5.3056
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01578AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11258304354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                +a+ + Er RR+++N ++ +Lr l P++     +K++ a+i+  A+eYI +L
  Oropetium_20150105_01578A 258 KANFATERERREQLNVKYKTLRMLFPNS-----TKNDRASIVGDAIEYIDEL 304
                                68999*********************99.....9***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-12253321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.51255304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.08E-9256309No hitNo description
PfamPF000101.7E-8258304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-9261310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-10262317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MIVGGGYFDD SSDQSLMAES FIRDISQAPK DKDNTSIELQ KFIVPSFSTE GFSNPINFHS  60
QGAGGINHLQ YQLGVGLEQG GPHPQGVTAS WDPSINTIQD HIANHNFGEY SQNISVDQQI  120
QQYDGLLHPN SAYTPAPDLL NILQCNLASA LPAATSVFGD TALNGETTGI TAIPESGLMF  180
TGDSQVQLGY PSAQTNLLKD ICYSLPQNYG FFSSEDDRDM MIGVGSGSDL FQEIDDRQFD  240
SVLKCRRGKG GLRKGKAKAN FATERERREQ LNVKYKTLRM LFPNSTKNDR ASIVGDAIEY  300
IDELNRTVKE LKILVEQKKH GNNRENMIKL DHEAVADGES SSMRQVRDDQ DNQLNATIRS  360
SWIQRRSKEC HVDVRIVDDE VNIKLTEKKK ANSLFHAAKV LDEFQLELNH AIGGIIGDHH  420
IFMFNTKVPE GASLYACAVA KRLLEAVDAQ HQDFHIFN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of tapetum programmed cell death (PCD) and degradation during male reproductive development (PubMed:23519457, PubMed:23385589). Interacts with TDR and promote tapetal PCD by regulating the expression of RTS, and the two lipid-transfer proteins C4 and C6, which function in microspore development (PubMed:23519457). Acts downstream from and interacts with TDR in the regulation of tapetal PCD. Regulates directly the aspartic protease AP25 and AP37 during tapetal PCD (PubMed:23385589). May not target the cysteine protease CP1 (PubMed:23519457, PubMed:23385589). {ECO:0000269|PubMed:23385589, ECO:0000269|PubMed:23519457}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01578A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826194.10.0transcription factor EAT1-like
SwissprotQ7X8R00.0EAT1_ORYSJ; Transcription factor EAT1
TrEMBLA0A2T7CZE40.0A0A2T7CZE4_9POAL; Uncharacterized protein
STRINGPavir.Gb00794.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-50bHLH family protein