PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01711A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 160aa    MW: 18643.3 Da    PI: 10.0646
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01711AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH566.9e-182369455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                hn  ErrRRdriN+++  L+ellP++     +K +K+++L +A++Y+ksLq
  Oropetium_20150105_01711A 23 FHNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 69
                               59*************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.7E-201676IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.5271968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-212295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.15E-172273No hitNo description
PfamPF000103.4E-152469IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-182574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEEGRAPRRT TPPTTRRSRS AEFHNFSERR RRDRINEKLK ALQELLPNCT KTDKVSMLDE  60
AIDYLKSLQL QLQMLVMGKG MAPVVPPELQ QYMHYITADP AQMPPLRPSQ QQPRPFQITQ  120
GDPQRQSNVE SDFLSQMQNF HSSEPPQNFL RPPKLQLYTP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732ERRRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01711A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447108.11e-103transcription factor PIF1 isoform X1
TrEMBLC5YG391e-102C5YG39_SORBI; Uncharacterized protein
STRINGPavir.Gb00491.1.p1e-104(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP95623043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.25e-27phytochrome interacting factor 3