PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_01764A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

HB-other

Protein Properties

Length: 105aa MW: 12241.7 Da PI: 8.5122

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_01764A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	70.6	1.8e-22	40	95	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k Oropetium_20150105_01764A 40 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 95 688999***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.41E-21	23	96	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-25	25	95	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	37	97	IPR001356	Homeobox domain
SMART	SM00389	1.8E-19	38	101	IPR001356	Homeobox domain
Pfam	PF00046	4.4E-20	40	95	IPR001356	Homeobox domain
CDD	cd00086	1.01E-17	40	95	No hit	No description
PRINTS	PR00031	1.6E-5	68	77	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	72	95	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.6E-5	77	93	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 105 aa Download sequence Send to blast
MIRGRASDPL GDEFDSKSGS ENVDGVSVDD QDPNQRPNKK KRYHRHTQHQ IQELEAFFKE 60 CPHPDDKQRK ELSRELGLEP LQVKFWFQNK RTQMKVINEP IIAK*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_01764A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT053832	9e-81	BT053832.1 Zea mays full-length cDNA clone ZM_BFb0217B02 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004976894.1	5e-58	homeobox-leucine zipper protein ROC2
Swissprot	Q0J9X2	1e-56	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A1E5WHW1	1e-57	A0A1E5WHW1_9POAL; Homeobox-leucine zipper protein ROC2
TrEMBL	A2XXU1	6e-58	A2XXU1_ORYSI; Uncharacterized protein
STRING	Si009409m	2e-57	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP26659	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	2e-43	homeodomain GLABROUS 2

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_01764A

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]