PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01884A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WOX
Protein Properties Length: 241aa    MW: 26842.6 Da    PI: 8.9801
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01884AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1892151357
                                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+++ +eq+++Le l++   r+p+  ++e ++++l    +++ ++V++WFqN++a+e++
  Oropetium_20150105_01884A  92 TRWNPCPEQIKVLEMLYRGgMRTPNSFQIECITEELskygRIEGKNVFYWFQNHKARERQ 151
                                8*****************99**************************************97 PP
2Wus_type_Homeobox113.88.4e-3791153365
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                +tRW+P peQik+Le+ly+ G+rtPn+ +i+ it+eL++yG+ie+kNVfyWFQN+kaRerqkq
  Oropetium_20150105_01884A  91 TTRWNPCPEQIKVLEMLYRGGMRTPNSFQIECITEELSKYGRIEGKNVFYWFQNHKARERQKQ 153
                                79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.001689156IPR001356Homeobox domain
PfamPF000467.6E-1692151IPR001356Homeobox domain
SuperFamilySSF466891.01E-1092157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-693151IPR009057Homeodomain-like
PROSITE profilePS500719.00599152IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MRLHHLHVAC SVDKSAVASP SPISLSPVTS SSATVPLSSS LLQYCLRPLA PKISFPESRS  60
RKKMVVLPEF TRVRNSSRLL KCTVQLPMAG TTRWNPCPEQ IKVLEMLYRG GMRTPNSFQI  120
ECITEELSKY GRIEGKNVFY WFQNHKARER QKQKRAALLT LSTTSSLPDN QTKDGAEKKE  180
VSTADEDASG RCKRRRCKSW GGDVHGNDGD EAKEVADHCN DDIDDVTLEL FPLHPQGKAC  240
*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01884A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4420075e-72AL442007.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete sequence.
GenBankAL6066355e-72AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAL6066925e-72AL606692.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02, complete sequence.
GenBankAP0149605e-72AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126125e-72CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankJF8361595e-72JF836159.1 Oryza sativa Japonica Group WUSCHEL-like homeobox protein (WOX4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823101.14e-92WUSCHEL-related homeobox 4-like isoform X2
SwissprotQ25AM25e-86WOX4_ORYSI; WUSCHEL-related homeobox 4
SwissprotQ7XTV35e-86WOX4_ORYSJ; WUSCHEL-related homeobox 4
TrEMBLA0A0A9HK039e-97A0A0A9HK03_ARUDO; Uncharacterized protein
STRINGPavir.Ga00299.1.p2e-89(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.12e-42WUSCHEL related homeobox 4