PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01974A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 455aa    MW: 49311.5 Da    PI: 6.0582
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01974AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.4e-07406429326
                                S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                                t++C ++     C+ G++C+F H+
  Oropetium_20150105_01974A 406 TKPCAYYNTARGCRNGANCTFLHD 429
                                789********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.3403431IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4406429IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-6406431IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5408430IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MMGSRRSSRV TWATGPNLCK VRLFLSDDSP SQAGLRPQDN LQAKGSWLMH AAGPNSDDSL  60
PPGFESLQPK NNVKIDISRI PFIRWTCPPK ILFNPDWLVV AGEESEEAVL QNERVVGALE  120
AIYPRPSNIP PNPFVSPDMS DSHYDDSRTQ LVPLIPIEEE DASDQLEEPP VGLLKNYHQS  180
EKYESAVINV PRVLDSSITA TAKYQASGLI GPASVGMSTE PDVLAAASAA YTAIMQSNEM  240
GSMIDQDLLI KILNDPAQLE RLMKGHGTVK QEQSTTSAVG APMLPEPQPQ MAASAQPSFP  300
DDPMVTYQNI NPTLPPPPPV LNRLAPAVPS VSVNPPASSG QPINFSRGIN YYKSLIHQHG  360
GERQEPLEQH GTQVGMYQQS NPTQASTVDV ASSGTVQGQY TKARHTKPCA YYNTARGCRN  420
GANCTFLHDA SAVRKEQPKG AKRLKLDSRI AGQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01974A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823312.10.0zinc finger CCCH domain-containing protein 30
SwissprotQ7XM161e-162C3H30_ORYSJ; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0A9CYC00.0A0A0A9CYC0_ARUDO; Uncharacterized protein
STRINGPavir.Ga00146.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86801013
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]