PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01978A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WOX
Protein Properties Length: 327aa    MW: 34075.5 Da    PI: 7.3048
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01978AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.8e-1942102357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t+eql++L+el+++   r p+ e+++++++ l    +++ ++V++WFqN++a+e++
  Oropetium_20150105_01978A  42 SRWTPTPEQLKILKELYYScgVRSPTSEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 102
                                7*****************7679*************************************97 PP
2Wus_type_Homeobox114.35.9e-3741104365
          Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                 +RWtPtpeQ+kiL+ely+ +G+r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Oropetium_20150105_01978A  41 GSRWTPTPEQLKILKELYYsCGVRSPTSEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKK 104
                                68***************9978*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1236106IPR009057Homeodomain-like
PROSITE profilePS5007110.2237103IPR001356Homeobox domain
SMARTSM003895.7E-739107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.5E-842102IPR009057Homeodomain-like
PfamPF000463.0E-1742102IPR001356Homeobox domain
CDDcd000864.15E-743104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MHQQQTMSAA GEGIAAGVGG RSGGGGGGGA GGGVSVCRPS GSRWTPTPEQ LKILKELYYS  60
CGVRSPTSEQ IQRITAMLRQ HGKIEGKNVF YWFQNHKARE RQKKRLTNLD VNAPAAGAGA  120
DASHLGILSL SSSSAAGATS PSTNLGMYTG NNGGASAMQL DTTAGDYRDN TAMVTDGCFL  180
QDYMGVRSTS GGHGETGAVA TPWAWFSSSH QRATTRTTLA PETLPLFPTG DDDGPRPRQG  240
GLGGEEEASR CGGTYYVPEL SSWGAAATAA TTSTTTVTIQ QQHRFYSNNY MQVPSHETHQ  300
DTAPGAGASL ELSLSSWCSP YHAGTM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11826GGRSGGGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01978A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347448e-87AM234744.1 Zea mays mRNA for WUS1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680535.11e-106WUSCHEL-related homeobox 1B
SwissprotQ7XM131e-75WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLK3ZCE41e-105K3ZCE4_SETIT; Uncharacterized protein
STRINGSi024219m1e-106(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-33WOX family protein
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]