PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01988A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 369aa    MW: 39882.1 Da    PI: 7.0289
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01988AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.73.1e-29220270151
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                k+r+rWt++LHerFv++v+qLGG++kAtPk il+lm+ +gLt++h+kSHLQ
  Oropetium_20150105_01988A 220 KTRIRWTQDLHERFVDCVNQLGGADKATPKGILKLMNSDGLTIYHIKSHLQ 270
                                68************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.836217277IPR017930Myb domain
SuperFamilySSF466896.45E-15218270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-26219270IPR009057Homeodomain-like
TIGRFAMsTIGR015576.6E-21220270IPR006447Myb domain, plants
PfamPF002491.0E-7224271IPR001005SANT/Myb domain
PfamPF143794.4E-20279324IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MNAKKIKLHD HHYGSQMCDP QVFQGASAGL SFQPGFVSSV PQQNGGAGSW PHEEYSPTPR  60
SVLAAQGGCV GSDTAAFFAA EHLLGMAPMA ALKTSPFGRS PEADLLYRSV DLPLLRDDSV  120
RTYYVPPQPR DAAKAPPALK LPLQQEQVHG LCANASTALL LGGEHQNHPF SPRVAASTLL  180
PAMETPSMLN SMDSTSSRSC SMVAPTAPTG NVVTAPAPSK TRIRWTQDLH ERFVDCVNQL  240
GGADKATPKG ILKLMNSDGL TIYHIKSHLQ DALPCSGEQI TQALRVQLDV QRRLHEQLEI  300
QRNLQLKIEE QGKKLQKMFE EQLKASKSVH GASFAGVSEQ ERDAYDDVQL LSVSSSDHND  360
VSFPSKIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-19220270252Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-19220270252Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-19220270151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-19220270151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-19220270151Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-19220270151Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-19220270252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-19220270252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-19220270252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-19220270252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-19220270252Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-19220270252Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01988A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1019511e-51AK101951.1 Oryza sativa Japonica Group cDNA clone:J033075I07, full insert sequence.
GenBankCT8309831e-51CT830983.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA208P17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025822779.11e-175probable transcription factor KAN2
RefseqXP_025822780.11e-175probable transcription factor KAN2
TrEMBLA0A2S3IBB01e-174A0A2S3IBB0_9POAL; Uncharacterized protein
STRINGSi022099m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69333751
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.18e-46G2-like family protein