PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_01991A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family C3H
Protein Properties Length: 304aa    MW: 31476.3 Da    PI: 9.9083
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_01991AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.26.1e-08105130227
                                -S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                                kt+ C  +     Ck+G++C+FaHg+
  Oropetium_20150105_01991A 105 KTRMCTKYNTAEGCKFGEKCHFAHGE 130
                                9***********************96 PP
2zf-CCCH38.12.6e-12271296127
                                --S---SGGGGTS--TTTTT-SS-SSS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                                ykt+lC +f + GtC +GdrC+FaHg+
  Oropetium_20150105_01991A 271 YKTKLCENFVK-GTCTFGDRCHFAHGE 296
                                9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.108.7E-73362IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.4933765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-53764IPR000571Zinc finger, CCCH-type
SMARTSM003564.33764IPR000571Zinc finger, CCCH-type
PfamPF146080.344562No hitNo description
SuperFamilySSF902299.42E-8103134IPR000571Zinc finger, CCCH-type
SMARTSM003560.27103130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45103131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-12105135IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4105130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.1370.103.8E-14170241IPR004088K Homology domain, type 1
SMARTSM003222.4E-9171241IPR004087K Homology domain
PROSITE profilePS5008414.529172236IPR004088K Homology domain, type 1
SuperFamilySSF547913.21E-14174265IPR004088K Homology domain, type 1
PfamPF000131.9E-10174237IPR004088K Homology domain, type 1
SuperFamilySSF902291.83E-9269300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-15269300IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-8270296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.516270297IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10271296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEGAAAARKR SRPDTANGVS AGGKRLRDTE SIQTGQSSKS KPCTKYFSTV GCPFGEGCHF  60
SHFVPGGYPA VAKMLNLGGN AVSAPTRVPV DHAVAANSHS ASTGKTRMCT KYNTAEGCKF  120
GEKCHFAHGE RELGKPAYMS HDGPSMGGRF GGRPEPHPQT PMGPPAGNFG ASATAKISVD  180
ASLAGGIIGK GGGNTKHISR VTGVKLSIRD HESDPNLKNI ELEGNFDQIK QASNMVSDLI  240
ASISIGMPAK NPSGATTAAR GGGGPGGRSN YKTKLCENFV KGTCTFGDRC HFAHGESEQR  300
RGV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_01991A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447282.11e-175zinc finger CCCH domain-containing protein 31
SwissprotQ7XPK11e-151C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBLC5Y9Z91e-173C5Y9Z9_SORBI; Uncharacterized protein
STRINGSb06g032000.11e-174(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-64C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]