PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02030A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 379aa    MW: 41489.7 Da    PI: 8.8243
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02030AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.51.7e-1858161285
                   trihelix   2 WtkqevlaLiearremeerlrrgk.................lkkplWeevskkmrergferspkqCkekwenlnkrykkikege 68 
                                Wt +e+l Li+a+r +++r   +                  +++++W++v ++++ +g+ rs++qC++kw+nl ++ykki++ e
  Oropetium_20150105_02030A  58 WTLHETLILITAKRLDDDRRAGAGggagaaagvslspttprSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKIRDYE 141
                                *************9655555432235566677777777777******************************************* PP

                   trihelix  69 kkrt...sessstcpyfdql 85 
                                 + t   ++++++++ + +l
  Oropetium_20150105_02030A 142 ARATaapAQQQQQHRSYWSL 161
                                99963334455555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.56250131IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.607.0E-453133IPR009057Homeodomain-like
PfamPF138374.6E-1157144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSGGSSDPSP SSSAAAVSPL AHFRPHPHMT TPPPSAPAPP PPSPASAGPP RDYRKGNWTL  60
HETLILITAK RLDDDRRAGA GGGAGAAAGV SLSPTTPRSA EQRWKWVENY CWNHGCLRSQ  120
NQCNDKWDNL LRDYKKIRDY EARATAAPAQ QQQQHRSYWS LERHERKDAM LPTNLAPEVF  180
DALSDVLSRR AARRGGEAIA GTPPPPLXXX XXXXXXXXSP RKPLLVQHPC HPPPPPPPHL  240
PLPPATSVSG MVIAPARRAA TVLNTTSCEE LSVSSESGDD EGSDEDEEPE PKRRRLNRLG  300
SSVVRSATVL ARTMVSCEEK RERRHRELLE LEERRLRLEE ERTEVRRQGF AGLISAVNSL  360
SGAIHALVSD HRSGDSSR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1291295KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02030A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-108trihelix transcription factor ASR3
TrEMBLA0A1B6PNZ91e-106A0A1B6PNZ9_SORBI; Uncharacterized protein
STRINGSb06g032410.11e-107(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-40Trihelix family protein