PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02073A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family B3
Protein Properties Length: 219aa    MW: 24821.7 Da    PI: 7.8037
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02073AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3505.2e-1613102388
                                EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                         B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvv 81 
                                k lt+sd ++ gr+vlpk+ ae++   ++ + ++ l + d++   +W++k++y  ++ks++y+l+  + eFvk ++L++gD+++
  Oropetium_20150105_02073A  13 KDLTNSDCGNIGRIVLPKRDAEANlpFLVDKDGMILEMDDLELpDVWKFKYRYwpNNKSRMYILE-TTGEFVKKHNLEVGDIFI 95 
                                789***********************777778999*****6656*********888888888888.9***************** PP

                                EEE-SSS CS
                         B3  82 Fkldgrs 88 
                                ++ ++r+
  Oropetium_20150105_02073A  96 IYQHKRT 102
                                *954433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-236112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-188105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.64211113IPR003340B3 DNA binding domain
SMARTSM010191.3E-1011113IPR003340B3 DNA binding domain
PfamPF023628.1E-1313101IPR003340B3 DNA binding domain
CDDcd100171.32E-1915104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
VLNCKDYHTV LRKDLTNSDC GNIGRIVLPK RDAEANLPFL VDKDGMILEM DDLELPDVWK  60
FKYRYWPNNK SRMYILETTG EFVKKHNLEV GDIFIIYQHK RTGRQVARAV KAKQLSSNLN  120
LLQCQCMKEG NSSEECGFAA LFGAAPWCSR SSTVLPLCCV RLSCSRELVK PEKVALPAPC  180
YIFACPEEPL RATGHQQCWL QTERSDEERS LTGPMMSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A6e-34139815100B3 domain-containing transcription factor LEC2
6j9c_D6e-34139815100B3 domain-containing transcription factor LEC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02073A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825471.14e-68putative B3 domain-containing protein Os04g0676650
SwissprotQ7XKC47e-53Y4765_ORYSJ; Putative B3 domain-containing protein Os04g0676650
TrEMBLA0A3L6Q9281e-67A0A3L6Q928_PANMI; Putative B3 domain-containing protein
STRINGPavir.Ga00232.1.p5e-68(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.13e-33B3 family protein