PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02160A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family ERF
Protein Properties Length: 216aa    MW: 24698.2 Da    PI: 10.4238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02160AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-19123172255
                        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+G+r+++ +g+W+AeIrdp++     r++lg++ t+e+Aa+a++a ++k++g
  Oropetium_20150105_02160A 123 PYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTYKTPEDAARAYDAEARKIRG 172
                                59*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-28123183IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-19123175IPR016177DNA-binding domain
PROSITE profilePS5103222.379123181IPR001471AP2/ERF domain
CDDcd000183.63E-26124175No hitNo description
PfamPF008471.9E-11124172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-27124176IPR001471AP2/ERF domain
PRINTSPR003678.9E-11124135IPR001471AP2/ERF domain
PRINTSPR003678.9E-11146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MCGGLAFSGL SMKPRASRIS TKPLAEVGKK RNQHTKIKNH GGWGRRRIRK VDEDDDDFEA  60
EFQAFSKTFD EMDENHDEFM ALRFFKDSSM DVSEPSKEDV VKHKPTEDDE STIVVLKRKR  120
KNPYRGIRRR PWGKWAAEIR DPRKGVRVWL GTYKTPEDAA RAYDAEARKI RGKKAKDVSL  180
ERMFSAQMTG FGLGLILLLL VIGRTLTSKP NHTDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-171241751567Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116130KRKRKNPYRGIRRRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02160A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001353801.13e-57uncharacterized protein LOC100384698
TrEMBLA0A1D6KNH48e-56A0A1D6KNH4_MAIZE; Ethylene-responsive transcription factor RAP2-2
STRINGSb07g022180.12e-56(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP168501012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-23ethylene-responsive element binding protein