PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_02230A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

ZF-HD

Protein Properties

Length: 125aa MW: 13266 Da PI: 8.2179

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_02230A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	81.6	9.1e-26	29	83	3	58
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +vrY eC++NhAa++GghavDGC+Ef+++ geegt a++Ca CgCHR+FHRr v+ Oropetium_20150105_02230A 29 GVRYCECRRNHAARMGGHAVDGCREFLAA-GEEGTGGAFRCATCGCHRSFHRRVVQ 83 69************************9.999******************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	4.0E-17	28	83	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.3E-26	30	82	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	3.4E-21	31	80	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.589	32	81	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MKRLVMLRRC HAPPPPAVVF GGRCCVGAGV RYCECRRNHA ARMGGHAVDG CREFLAAGEE 60 GTGGAFRCAT CGCHRSFHRR VVQRCCSCFC RDDEDTDAHA AAAARGRWDD CSPAESTASG 120 TTAS*

Functional Description ? help Back to Top
Source	Description
UniProt	Inhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_02230A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107904	3e-47	AK107904.1 Oryza sativa Japonica Group cDNA clone:002-134-F11, full insert sequence.
GenBank	AP005159	3e-47	AP005159.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11.
GenBank	AP014964	3e-47	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	3e-47	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBank	CT831443	3e-47	CT831443.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA034C07, full insert sequence.
GenBank	CT831444	3e-47	CT831444.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA001I02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151712.2	3e-41	mini zinc finger 3
Swissprot	Q0J5F8	2e-33	MIF4_ORYSJ; Mini zinc finger protein 4
TrEMBL	B6U404	2e-45	B6U404_MAIZE; Mini zinc finger 3
STRING	OGLUM08G16680.1	1e-31	(Oryza glumipatula)
STRING	GRMZM2G370863_P01	2e-32	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1431	34	120

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	4e-24	mini zinc finger 1

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_02230A

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]