PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02233A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 242aa    MW: 27780.7 Da    PI: 7.949
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02233AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.64.8e-53161431128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                l+pGfrFhPtdeelv++yLk+k+++k++++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t++g+Wk
  Oropetium_20150105_02233A  16 LMPGFRFHPTDEELVSFYLKRKIQQKPISI-ELIRQLDIYKYDPWDLPKLASTGEKEWYFYCPRDRKYRNSVRPNRVTAAGFWK 98 
                                689***************************.89***************9888999***************************** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                atg+d++++s+ +++ +glkk+Lvfykgra +g ktdW+mhe+rl
  Oropetium_20150105_02233A  99 ATGTDRPIYSSeSTKCIGLKKSLVFYKGRAARGMKTDWMMHEFRL 143
                                **********855666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-5515149IPR003441NAC domain
PROSITE profilePS5100552.40116158IPR003441NAC domain
PfamPF023652.2E-2618143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MELKNDVSMD KSDEILMPGF RFHPTDEELV SFYLKRKIQQ KPISIELIRQ LDIYKYDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSVRPNR VTAAGFWKAT GTDRPIYSSE STKCIGLKKS  120
LVFYKGRAAR GMKTDWMMHE FRLPSPSDPS LPKRPIDKNI PLNVSIISTA EAEMFSAFQT  180
VQASEFALES SSCSLQVAPP EPSSQFMSRH GLQDSEEWRC NIPWDSFLSP AAVQIQTELP  240
H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-501614717146NO APICAL MERISTEM PROTEIN
1ut4_B3e-501614717146NO APICAL MERISTEM PROTEIN
1ut7_A3e-501614717146NO APICAL MERISTEM PROTEIN
1ut7_B3e-501614717146NO APICAL MERISTEM PROTEIN
3swm_A4e-501614720149NAC domain-containing protein 19
3swm_B4e-501614720149NAC domain-containing protein 19
3swm_C4e-501614720149NAC domain-containing protein 19
3swm_D4e-501614720149NAC domain-containing protein 19
3swp_A4e-501614720149NAC domain-containing protein 19
3swp_B4e-501614720149NAC domain-containing protein 19
3swp_C4e-501614720149NAC domain-containing protein 19
3swp_D4e-501614720149NAC domain-containing protein 19
4dul_A3e-501614717146NAC domain-containing protein 19
4dul_B3e-501614717146NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02233A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683500.11e-136protein FEZ
SwissprotQ9ZVH01e-85FEZ_ARATH; Protein FEZ
TrEMBLA0A3L6PQ101e-136A0A3L6PQ10_PANMI; Protein FEZ-like
STRINGSi015514m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33663882
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.17e-88NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]