PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02318A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 259aa    MW: 28680.6 Da    PI: 4.6835
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02318AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.94.7e-2077130356
                                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                k++++t+eq++ Le+ Fe+++++  e+++eLA++lg+  rqV vWFqNrRa++k
  Oropetium_20150105_02318A  77 KKRRLTTEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWK 130
                                56789************************************************9 PP
2HD-ZIP_I/II133.38.7e-4376168193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                ekkrrl++eqv++LE+sFeee+kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE+d+++Lk+aydal+++++ L++++
  Oropetium_20150105_02318A  76 EKKRRLTTEQVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLETDFDRLKAAYDALAADHQGLRADN 159
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreelke 93 
                                ++Lr+++++
  Oropetium_20150105_02318A 160 DRLRAQVTS 168
                                ****99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007118.28572132IPR001356Homeobox domain
SuperFamilySSF466893.55E-1972134IPR009057Homeodomain-like
SMARTSM003898.2E-1975136IPR001356Homeobox domain
CDDcd000869.31E-1877133No hitNo description
PfamPF000462.4E-1777130IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-2078138IPR009057Homeodomain-like
PRINTSPR000314.0E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000314.0E-6112128IPR000047Helix-turn-helix motif
PfamPF021834.3E-16132174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDPGSTGFDS GGARRGGGPQ MLLFGGGGSA NSNGFIRGVP MAVLGRDDDA RVGKRPFFTT  60
HEELFEEEYY DEQAPEKKRR LTTEQVQMLE RSFEEENKLE PERKTELARR LGMAPRQVAV  120
WFQNRRARWK TKQLETDFDR LKAAYDALAA DHQGLRADND RLRAQVTSLT EKLQGKVTSP  180
SATTTVQEVD HSDDHTNISD PEKLLVQQVK EAHGALSSEE EDGGVVSDEG CSFDFPDALF  240
TVGPAEAQLG SLASWFWN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124132RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02318A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973433.11e-129homeobox-leucine zipper protein HOX5
SwissprotQ6ZA746e-89HOX5_ORYSJ; Homeobox-leucine zipper protein HOX5
SwissprotQ9XH367e-89HOX5_ORYSI; Homeobox-leucine zipper protein HOX5
TrEMBLB4FLB11e-135B4FLB1_MAIZE; HB transcription factor
STRINGSi014228m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26093887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-53homeobox 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]