PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02502A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 396aa    MW: 42371.8 Da    PI: 10.2639
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02502AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.42.4e-1562143286
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergfer...spkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+++   s +qCk++++ l+k+yk +k+   +       ++p+
  Oropetium_20150105_02502A  62 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKapkSDVQCKNRIDTLKKKYKVEKAKHDS-------SWPF 138
                                *************************************87788876222667***************9998886.......5*** PP

                   trihelix  82 fdqle 86 
                                f++l+
  Oropetium_20150105_02502A 139 FHRLD 143
                                ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-2360145No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDDDAGASPS PSPSPSRSPS PLPVADPVTV AAAPPGHVAV AIPLRKPSPS SGGGGGGRED  60
AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKAPKS DVQCKNRIDT  120
LKKKYKVEKA KHDSSWPFFH RLDDLLAPVY KLGSGSSSAA RSASPMVPPR FSFPQRTRTP  180
LQPSAGAKRR MPSPPPQPSA SSDSSDGFPP EPPFATVPPL ATVANGKRQR VEEPVPANGA  240
ESSDRAQGLR ELAQAIRRLG DVYERVEGAK REQELRMERE RLEAARELEE QRVQFFLKMQ  300
MELSKATGGA SSAMPVAVAT AVDGNGSRRA AMATDAATTS NHKVRYRIKD IRHRHSAPQS  360
HYENNASTAA PASGKGSDSX XXXXXXXXXX XXXSQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02502A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9650911e-150EU965091.1 Zea mays clone 283747 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170546.11e-166uncharacterized protein LOC100384564
TrEMBLA0A3L6EM851e-167A0A3L6EM85_MAIZE; Trihelix transcription factor ASIL2
STRINGPavir.J27535.1.p1e-169(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.19e-33sequence-specific DNA binding transcription factors