PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02507A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 312aa    MW: 34061 Da    PI: 6.2615
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02507AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.51.1e-18150204256
                                T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                rk+ +++k+q   Lee F+++++++ e++ +LA++l+L  rqV vWFqNrRa+ k
  Oropetium_20150105_02507A 150 RKKLRLSKDQSAFLEESFKEHSTLTPEQKSDLASRLNLRPRQVEVWFQNRRARTK 204
                                678899***********************************************98 PP
2HD-ZIP_I/II119.51.8e-38150239191
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                                +kk+rlsk+q+++LEesF+e+++L+pe+K++la++L+l+prqv+vWFqnrRARtk+kq+E+d e+Lkr++ +l++en+rL++ev
  Oropetium_20150105_02507A 150 RKKLRLSKDQSAFLEESFKEHSTLTPEQKSDLASRLNLRPRQVEVWFQNRRARTKLKQTEVDREYLKRCCATLTQENRRLQREV 233
                                69********************************************************************************** PP

                HD-ZIP_I/II  85 eeLreel 91 
                                +eLr +l
  Oropetium_20150105_02507A 234 AELR-AL 239
                                ***9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.022146206IPR001356Homeobox domain
SuperFamilySSF466898.77E-18148214IPR009057Homeodomain-like
SMARTSM003893.8E-16148210IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-18150204IPR009057Homeodomain-like
CDDcd000861.25E-16150207No hitNo description
PfamPF000464.6E-16150204IPR001356Homeobox domain
PROSITE patternPS000270181204IPR017970Homeobox, conserved site
CDDcd146860.00714199240No hitNo description
PfamPF021832.8E-8206239IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.3E-21206249IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MELKLCLGDS SAPAKETFTT VLTSAPAGNI EGHELVLELG AGTAKRAEQD NQKTYMQPGE  60
DDEANSQRKS LVRLSLSCPL LPASVDAGSV NSVVSVQGFD VNNVPEDEDE AKLRSSSTSS  120
LQVEVPFCHT ADQDVAEDEE NGGGVDGGVR KKLRLSKDQS AFLEESFKEH STLTPEQKSD  180
LASRLNLRPR QVEVWFQNRR ARTKLKQTEV DREYLKRCCA TLTQENRRLQ REVAELRALR  240
TTYPIYSHQL AGGARRCPSC DNNNATPYSV VTAVSSSVVA APPSMTTLFA RPYSGPFTIH  300
PVLRPHPSAT S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198206RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02507A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952725.11e-128homeobox-leucine zipper protein HOX7
SwissprotA2X6748e-87HOX7_ORYSI; Homeobox-leucine zipper protein HOX7
TrEMBLA0A368PMA81e-127A0A368PMA8_SETIT; Uncharacterized protein
STRINGSb04g023410.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128943035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.16e-53homeobox from Arabidopsis thaliana