PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02699A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family DBB
Protein Properties Length: 297aa    MW: 31766.4 Da    PI: 5.1737
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02699AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.81.9e-07446541
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                C+ +e   ++  C  ++  lC+ C +e+H        H++ p
  Oropetium_20150105_02699A  4 QCDACEGAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46
                               7******99*********************6678888888877 PP
2zf-B_box27.18.4e-095385234
                   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeH 34
                               + ++C+ ++ek + +fC +++ l+C+dC + +H
  Oropetium_20150105_02699A 53 RLPRCDVCQEKAAFIFCVEDRALFCRDCDEPIH 85
                               679***************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.011147IPR000315B-box-type zinc finger
CDDcd000212.07E-6347No hitNo description
SMARTSM003362.1E-9447IPR000315B-box-type zinc finger
PfamPF006431.4E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9875299IPR000315B-box-type zinc finger
SMARTSM003367.6E-145299IPR000315B-box-type zinc finger
PfamPF006431.7E-65395IPR000315B-box-type zinc finger
CDDcd000215.27E-75585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCDACEG AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLEAL SSRLPRCDVC  60
QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGFGSAS ACNGADSGGA  120
HDADHHAPPS KAAEQPTSSQ TTTASAAAAQ QVPPSPPQFL PQGWAVDDLL QFSDYESADK  180
ASIKLINPNS SGPRALRSVF VPSHLTHDSR CESPLGFKEL DWFADIDLFQ DQQAPNKAAG  240
RMAAEVPELF RSHQAANDAA YYRPGNKAAP GVRQNKKARI EVPDDEDDYL IVPDLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02699A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0990651e-162FP099065.1 Phyllostachys edulis cDNA clone: bphylf051n24, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454143.11e-138B-box zinc finger protein 24
TrEMBLC5XX801e-136C5XX80_SORBI; Uncharacterized protein
STRINGSb04g025400.11e-137(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32023368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.14e-70DBB family protein