PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_02841A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

TCP

Protein Properties

Length: 213aa MW: 22430.1 Da PI: 10.7157

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_02841A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110.7	2e-34	55	145	9	89
TCP 9 skihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssasnsssg. 88 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tg+++++a ++ +++ssss+++++ + Oropetium_20150105_02841A 55 KDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGSGTTPAVFVsssAPSTSSSSSHFQQ-Tv 137 89*******************************************************999994443222222222222222.12 PP TCP 89 .......k 89 + Oropetium_20150105_02841A 138 lgkrpreE 145 33333330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.5E-31	54	133	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	54	108	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MATRDVSAPA AAAMFHVYQP PQIPTAVVPA PVASSDGRAV TTTPGKKKSA HGGGKDRHSK 60 VNGRGRRVRM PIVCAARVFQ LTRELGLKSD GQTIEWLLRQ AEPSILAATG SGTTPAVFVS 120 SSAPSTSSSS SHFQQTVLGK RPREEGGDAT VAXXXXXXXX XXXXXXXXXT DAWGFSPLEA 180 QAATYVPMAQ AHHLNLLAAL SGAARRAEEE SR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_02841A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP095725	1e-130	FP095725.1 Phyllostachys edulis cDNA clone: bphyem123a10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953208.1	4e-78	transcription factor TCP21-like
TrEMBL	A0A368PNU6	1e-76	A0A368PNU6_SETIT; Uncharacterized protein
STRING	Sb04g026970.1	5e-77	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-33	TCP family protein

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_02841A