PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02879A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family YABBY
Protein Properties Length: 263aa    MW: 27786.8 Da    PI: 8.0297
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02879AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY203.49.1e-63202185170
                      YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldeslkee............... 70 
                                s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+       + +a+++l + ++ +               
  Oropetium_20150105_02879A  20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLlppAAPPASNQLLNFGQSSllsptsphglldela 103
                                578********************************************998665566777776555555578889999*888888 PP

                      YABBY  71 ......lleelkveeenlksnve.keesastsvssekl......senedee..vprvppvirPPekrqrvPsaynrfikeeiqr 139
                                      l+e+   + ++++     +++s  ++v++  +       ++e+ e  ++ +p v+rPPekrqrvPsaynrfik+eiqr
  Oropetium_20150105_02879A 104 lqapslLMEQASANLSSITGGGGrSYSSCASNVPAVPMqqpvkpVHHEQPElpIKSAPSVNRPPEKRQRVPSAYNRFIKDEIQR 187
                                87776633333333333333222022222333333344666665333444411445677************************* PP

                      YABBY 140 ikasnPdishreafsaaaknWahfPkihfgl 170
                                ika+nPdi+hreafsaaaknWahfP+ihfgl
  Oropetium_20150105_02879A 188 IKAGNPDITHREAFSAAAKNWAHFPHIHFGL 218
                                *****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.4E-6921218IPR006780YABBY protein
SuperFamilySSF470951.57E-7163211IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.6E-4167210IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MMSSSSSSTA AFPLDHLAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL  60
LSVNLRGLLL PPAAPPASNQ LLNFGQSSLL SPTSPHGLLD ELALQAPSLL MEQASANLSS  120
ITGGGGRSYS SCASNVPAVP MQQPVKPVHH EQPELPIKSA PSVNRPPEKR QRVPSAYNRF  180
IKDEIQRIKA GNPDITHREA FSAAAKNWAH FPHIHFGLMP DQGLKKTFKS QDSAEDMLLK  240
DGLYAAAAAA AAAAVNMGVT PF*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02879A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452852.11e-139protein YABBY 4
SwissprotA2X7Q31e-124YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-124YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A1E5UN771e-139A0A1E5UN77_9POAL; Protein YABBY 4
STRINGSb04g033590.11e-139(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.13e-64YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]