PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02881A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family NAC
Protein Properties Length: 404aa    MW: 46441.6 Da    PI: 7.6823
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02881AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.54.4e-56291581129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksg 81 
                                +ppGfrFhPtdeelv++yL+kkv+++k++l +vikevd+yk+ePwdL++  k+   e++ewyfFs++dkky+tg+r+nrat++g
  Oropetium_20150105_02881A  29 VPPGFRFHPTDEELVDYYLRKKVASNKIDL-DVIKEVDLYKIEPWDLQEkcKIGMeEQNEWYFFSHKDKKYPTGTRTNRATTAG 111
                                69****************************.9***************952433333556************************* PP

                        NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                +Wkatg+dk++++ k+ lvg++ktLvfy+grap+g+k+dW+mheyrle
  Oropetium_20150105_02881A 112 FWKATGRDKPIYA-KNCLVGMRKTLVFYRGRAPNGQKSDWIMHEYRLE 158
                                *************.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-5924167IPR003441NAC domain
PROSITE profilePS5100557.40629218IPR003441NAC domain
PfamPF023651.8E-2830157IPR003441NAC domain
SuperFamilySSF1019418.24E-59206218IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MLRFISSEFV FFRGLIWWKN KTMDGSSHVP PGFRFHPTDE ELVDYYLRKK VASNKIDLDV  60
IKEVDLYKIE PWDLQEKCKI GMEEQNEWYF FSHKDKKYPT GTRTNRATTA GFWKATGRDK  120
PIYAKNCLVG MRKTLVFYRG RAPNGQKSDW IMHEYRLETS QNATAPVRRL SLPIYGLRPL  180
PYHHVIEFFT IHVPDENCFC LRSMVQEEGW VVCRVFKKRV ATVQRMADSS PCWFDDQVAG  240
FMPPALGSPR QLMMHHHHPS ALYGGHQQQT YHCKPEMKYH HLLPSQAEAF LPQLESPKPP  300
AYIGHGSGSL QSSEEASRYT TQQQTTMETA YMPPVDDSAT DWRVLDMFVA SQLFSHSDGT  360
PKEPNYSNNP VPVFHLAENS KQEETLDYAS TSASGGGEAQ LWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-48191575140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02881A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0750931e-180KT075093.1 Panicum virgatum secondary wall NAC master switch (SWN8B) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825485.10.0NAC domain-containing protein 7-like
SwissprotF4HYV51e-105NAC26_ARATH; NAC domain-containing protein 26
TrEMBLA0A1E5UN670.0A0A1E5UN67_9POAL; NAC domain-containing protein 7
STRINGPavir.J39804.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23703892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62700.13e-97Arabidopsis NAC domain containing protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]