PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02899A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family Trihelix
Protein Properties Length: 685aa    MW: 73407.7 Da    PI: 5.1013
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02899AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.21.1e-2399209187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.........................rergfer.spkqCkekwenln 58 
                                rW+++e+laLi++r+e++ ++r++ lk+plWe+v++                           ++ g++r s+k+Ckek+en+ 
  Oropetium_20150105_02899A  99 RWPREETLALIRIRSELDAAFRNAPLKAPLWEDVARLEpsevvgvvqddkdlgarqlygagklAALGYHRrSAKKCKEKFENVD 182
                                8***********************************999*****************************766************* PP

                   trihelix  59 krykkikegekkrtsessstcpyfdqlea 87 
                                k+y+++ke + +r++++s  +++f++lea
  Oropetium_20150105_02899A 183 KYYRRTKEARAGRQDGKS--YRFFSELEA 209
                                ************866665..******985 PP
2trihelix49.41.2e-15437493153
                   trihelix   1 rWtkqevlaLiearremeerlr....rgklkkplWeevskkmrergferspkqCkek 53 
                                rW+k+ev+aLi++r e++e+      +g  k+plWe++++ mr+ g++rs+k+Ckek
  Oropetium_20150105_02899A 437 RWPKEEVQALIQLRAEKDEQQYhdtgTGPTKGPLWEDIAAGMRRIGYSRSAKRCKEK 493
                                8**************98877662322568***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-1398210No hitNo description
CDDcd122035.67E-2199189No hitNo description
PROSITE profilePS500904.90299182IPR017877Myb-like domain
PROSITE profilePS500906.075430493IPR017877Myb-like domain
PfamPF138373.7E-9436493No hitNo description
CDDcd122031.30E-16437493No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MLHHHGGAGG SPYTSSTSGD AIAFSLPPPP SGPISFASIQ RLPRQLQPPG TSALAELPLD  60
GSSGGGAADL HDDDDDMPAD AYGASETGAG ASGSGSSTRW PREETLALIR IRSELDAAFR  120
NAPLKAPLWE DVARLEPSEV VGVVQDDKDL GARQLYGAGK LAALGYHRRS AKKCKEKFEN  180
VDKYYRRTKE ARAGRQDGKS YRFFSELEAL HAAAPQRHQQ AAPTVQADPQ PSATAMAWMA  240
AGPGSLAPGP WLPDLRFSWM SGSESESDDE FDVRGAAEAD ADECDREMMA LFEGMMRQVT  300
EKQEAMQRAF LETLERWEAE RTAREEAWRR QEVARMNRER EQLAKERAAA ASRDAALIAF  360
LERVGGGGPH STVRPPSSAV AVPTPMPDHT PLPSPRQDAA AASSLQVVSV YVPPPKSEEA  420
WAWTAGGESG GSTSSSRWPK EEVQALIQLR AEKDEQQYHD TGTGPTKGPL WEDIAAGMRR  480
IGYSRSAKRC KEKRPEDSKT CPYFHQLDAM YRKKQRFAGT GGVATTASGS GAYMTAAVAG  540
SCQASPSQRE IEGKSGNDVS KQNIVGVANV HAAPGNGEKE QTTIAGGDGI ESTRAEKDTE  600
RETNLQLQQR RQEFAGDETD SDDDVEGNYY TDEGNGGDSM QYRTWFQKPH VTGSSSGNTS  660
APTAPATAAT SSGAPTGSTF LAVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02899A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9472757e-83EU947275.1 Zea mays clone 336252 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953287.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_012699251.10.0trihelix transcription factor GTL1 isoform X1
RefseqXP_025798824.10.0trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A0A9DG780.0A0A0A9DG78_ARUDO; Uncharacterized protein
STRINGSi016578m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33240.12e-31GT-2-like 1