PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_02902A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family HD-ZIP
Protein Properties Length: 254aa    MW: 27998.8 Da    PI: 4.6166
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_02902AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-1852105456
                                -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  Oropetium_20150105_02902A  52 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 105
                                458**************8899********************************9 PP
2HD-ZIP_I/II119.81.5e-3850143193
                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLeke 83 
                                e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal+++ e+L++e
  Oropetium_20150105_02902A  50 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYADLRARYDALRDRVEALKQE 133
                                69*****************9999************************************************************* PP

                HD-ZIP_I/II  84 veeLreelke 93 
                                + +L+++l+e
  Oropetium_20150105_02902A 134 KVALATQLDE 143
                                *****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.28E-1739109IPR009057Homeodomain-like
PROSITE profilePS5007117.32946107IPR001356Homeobox domain
SMARTSM003894.7E-1749111IPR001356Homeobox domain
CDDcd000861.25E-1651108No hitNo description
PfamPF000461.5E-1552105IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-1852113IPR009057Homeodomain-like
PRINTSPR000316.2E-77887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000316.2E-787103IPR000047Helix-turn-helix motif
PfamPF021834.9E-13107148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDQFLVPPPP AHQYEDQFLH PLMTMVGDDP DLAGGGSSSA AGARAGGSGE RKRRFTEEQV  60
RSLETTFHAR RAKLEPREKA ELARELGLQP RQVAIWFQNK RARWRSKQLE HDYADLRARY  120
DALRDRVEAL KQEKVALATQ LDELKGRLNE LQDQSASCDV VVTGGTASEA NDGKRDYNTT  180
ATNNSSAVSS QDDTAAMAPA AVTTSEDSTA AAAEGYYDYD DHVAYGWGLP VDPFCNPPEL  240
WDTWPLLEWN AVA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_02902A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636851e-100AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankAK2876041e-100AK287604.1 Oryza sativa Japonica Group cDNA, clone: J065054D22, full insert sequence.
GenBankEU8475151e-100EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151825.18e-90homeobox-leucine zipper protein ATHB-6
SwissprotA2X7U13e-86HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A1E5W7L43e-92A0A1E5W7L4_9POAL; Homeobox-leucine zipper protein HOX24
STRINGGRMZM2G117164_P011e-89(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-27homeobox 7