PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_02993A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

GATA

Protein Properties

Length: 119aa MW: 13113.9 Da PI: 11.3685

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_02993A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	24.1	4.9e-08	7	21	21	35
GATA 21 tLCnaCGlyyrkkgl 35 +LCnaCG++yrkk++ Oropetium_20150105_02993A 7 SLCNACGIRYRKKRR 21 6***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	1.3E-4	7	22	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 119 aa Download sequence Send to blast
MITVAASLCN ACGIRYRKKR RQELGLDNKQ QPKQQAQQEQ QQPAQASLPQ QQQRRQHLQR 60 DLSEGTGSVK DSSSTTSTTK RSSLQVVKKR RVLMGVEEAA ILLMALSSSS RSPTLLHG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_02993A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006655008.1	1e-23	PREDICTED: GATA transcription factor 23-like
Refseq	XP_015692844.1	1e-23	PREDICTED: GATA transcription factor 23-like
TrEMBL	A0A0A9C9F2	7e-24	A0A0A9C9F2_ARUDO; Uncharacterized protein
STRING	Pavir.Ea01306.1.p	3e-23	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6721	28	54

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_02993A