PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Oropetium_20150105_03010A

Organism

Oropetium thomaeum

Taxonomic ID

1148796

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium

Family

bHLH

Protein Properties

Length: 131aa MW: 14233.2 Da PI: 11.2045

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Oropetium_20150105_03010A	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.4	0.0003	72	110	16	55
HHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ ++e Lr+l+P+ + ++++ ++ L+ A YI Lq Oropetium_20150105_03010A 72 VRRKMEALRRLVPSdD--GGDEVVDELLLLRAAAGYIARLQ 110 67899*******66..56666*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-7	70	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-4	73	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MGSQTGRRNS STSRTRRAIL PAEASSVVVP SRRPPLLQSP TPTSIKVKAA GKNGKQVRTT 60 SSKRHDHDVE AVRRKMEALR RLVPSDDGGD EVVDELLLLR AAAGYIARLQ AQVRVMQLMV 120 DVLEHAAQDD *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Oropetium_20150105_03010A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	Pavir.Ca01133.1.p	6e-20	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9111	21	26

Link Out ? help Back to Top
Phytozome	Oropetium_20150105_03010A