PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03041A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 260aa    MW: 27706.2 Da    PI: 10.9743
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03041AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.2e-133987254
                               HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                               ++ h+e+ErrRR+riN  +++Lr+++ ++    +k ++Ka+ L  A++++k+L
  Oropetium_20150105_03041A 39 KVQHSEAERRRRERINAHLATLRRMIVPD----AKQMDKATLLASAINHLKDL 87
                               578*************************7....578***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-133791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.7673787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-133791IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-103987IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-94393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2604.9E-5140181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MTKHGGSALP SVCTAAPPKR SASSSSSRRS ATTEARALKV QHSEAERRRR ERINAHLATL  60
RRMIVPDAKQ MDKATLLASA INHLKDLMKR RASEAAPQPP PIPVPAEANG ITVDSGXXXX  120
XXXXXXXDGR TAVIAYIKAS ISCDDRPGLL ADIAAAVRGL GLRPVRAEVA SLGGRTRCSF  180
VLCRVVVGGD VGLMMIKPME EAVRQALATA AFSEVVLVQA GCSSSRSNKR QRILDLEPSR  240
IGKFEKLNDG VKKSTNGES*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03041A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809242.14e-56transcription factor bHLH51-like
TrEMBLA0A2T7E8P14e-56A0A2T7E8P1_9POAL; Uncharacterized protein
STRINGPavir.J32610.1.p2e-55(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.15e-16basic helix-loop-helix 32