PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03204A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family DBB
Protein Properties Length: 134aa    MW: 14234 Da    PI: 4.4177
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03204AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69.2e-07446541
                   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                                C+ +e  e++  C  ++  lC+ C  e H        H++ p
  Oropetium_20150105_03204A  4 LCSACEAAEASVLCCADDAALCAPCDREVHAAnrlagkHQRLP 46
                               7******99*********************6577899998877 PP
2zf-B_box28.82.5e-0965105337
                   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                                +++C+ +++  + +fC +++ llC++C ++ H        H
  Oropetium_20150105_03204A  65 PPRCDICQDCDAYFFCLEDRALLCRTCDVAVHTAndfvsaH 105
                                68999999977*********************555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.736147IPR000315B-box-type zinc finger
CDDcd000219.03E-5447No hitNo description
SMARTSM003366.1E-1463110IPR000315B-box-type zinc finger
SuperFamilySSF578454.85E-563105No hitNo description
PfamPF006437.5E-865104IPR000315B-box-type zinc finger
CDDcd000212.63E-566110No hitNo description
PROSITE profilePS501199.0368110IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MKLLCSACEA AEASVLCCAD DAALCAPCDR EVHAANRLAG KHQRLPLLAP GGGAAASAGT  60
VAVAPPRCDI CQDCDAYFFC LEDRALLCRT CDVAVHTAND FVSAHRRFLL TGVQVGQEQQ  120
GEEDERSTEQ PEPE
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03204A
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020395809.12e-67B-box zinc finger protein 22
SwissprotQ9SYM22e-47BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A1D6M0674e-66A0A1D6M067_MAIZE; B-box zinc finger protein 22
TrEMBLA0A3L6E6D14e-66A0A3L6E6D1_MAIZE; B-box zinc finger protein 22
STRINGSb09g006370.13e-66(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-28light-regulated zinc finger protein 1