PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03337A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family WRKY
Protein Properties Length: 254aa    MW: 28223.7 Da    PI: 8.4818
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03337AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.81.8e-17133194259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59 
                                +D y+WrKYG K++ ++e+pr YY+C ++   +Cp+kk v+r+++  p    +t   eH++e
  Oropetium_20150105_03337A 133 NDHYHWRKYGEKKILNAEYPRLYYKCGYSddhKCPAKKYVQRQNSsHPPQYMVTLIHEHTCE 194
                                7**************************998899********987415667778888888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.0E-20123194IPR003657WRKY domain
SuperFamilySSF1182905.62E-19127194IPR003657WRKY domain
SMARTSM007746.6E-26132195IPR003657WRKY domain
PROSITE profilePS5081115.25133196IPR003657WRKY domain
PfamPF031065.5E-19133194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSTRHSRSGR MQPPRPSQAI QHLRRGTQLV AELRQKFELN PLDLDLRKAA AALMSQIAEF  60
SESSLSILLS TESEHSSSDA GALAVASPAG HSSAASAETR HGASARTGKV RHRRARLGEK  120
LPIREILTDA PENDHYHWRK YGEKKILNAE YPRLYYKCGY SDDHKCPAKK YVQRQNSSHP  180
PQYMVTLIHE HTCETLFQNV PCTSIGSSQV FDFAKASICP PLMAGTTGLE KEEETWACTS  240
TTHSCENELS AYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03337A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681297.12e-73probable WRKY transcription factor 63
TrEMBLK3Z8R34e-72K3Z8R3_SETIT; Uncharacterized protein
STRINGSi022933m7e-73(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99932944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.15e-18WRKY DNA-binding protein 55