PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03398A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 262aa    MW: 29208.4 Da    PI: 8.4722
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03398AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.41.4e-324599155
                    G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                               k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl
  Oropetium_20150105_03398A 45 KQRLRWTSDLHSRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 99
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.17142102IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-3043100IPR009057Homeodomain-like
SuperFamilySSF466891.67E-164499IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-2545100IPR006447Myb domain, plants
PfamPF002495.6E-74798IPR001005SANT/Myb domain
PfamPF143797.0E-24132177IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MMYHAKSFSV PFAPQRAQNS EHVSNMGAIG GSNISNPANP VGSGKQRLRW TSDLHSRFVD  60
AIAQLGGPDR ATPKGVLTVM GVPGITIYHV KSHLQKYRLA KYVPESPAEG CKDEKKDSSD  120
SLSNTDSAPG LQVNEALKMQ MEVQKRLHEQ LEVQRQLQLR IEAQGKYLQM IIEEQRKLGG  180
SVKASEDQKX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXFE THLIGPWDQE  240
ICGKNVCGIA FSVEDSKQTQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-2244102159Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-2244102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-2244102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-2244102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-2244102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-2244102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-2244102159Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-2244102159Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03398A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961661.11e-147myb family transcription factor PHL7
SwissprotQ9SJW03e-70PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLK3Z8V21e-145K3Z8V2_SETIT; Uncharacterized protein
STRINGSi022972m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.18e-53G2-like family protein