PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03402A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bZIP
Protein Properties Length: 254aa    MW: 28589.3 Da    PI: 9.1216
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03402AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.71.6e-102564541
                               CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS
                     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41
                               k+ rr+++NReAAr+sR++Kka++e+Le+   k ++Le+e
  Oropetium_20150105_03402A 25 KALRRLAQNREAARKSRLKKKAYVEQLETsrlKLAQLEKE 64
                               778*************************833344444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.3E-81769No hitNo description
SMARTSM003382.4E-61984IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.6342367IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.63E-72567No hitNo description
PfamPF001701.1E-72564IPR004827Basic-leucine zipper domain
PROSITE patternPS0003602843IPR004827Basic-leucine zipper domain
PfamPF141449.1E-12108164IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
FELGHLVARE VFGSGDKTKD ELGPKALRRL AQNREAARKS RLKKKAYVEQ LETSRLKLAQ  60
LEKELQRARQ QGIFISAPGN QAHSTCDDGT LAFETEYARW VEEHNKLINE LRAAVNAHAG  120
DDDLRRIVDC ITAHYRESFR LNGAAARADA FHLLASHLEP LTEQQLASIW SLQQSSQQAE  180
KVLSQGVEAL QQSADNLRFQ TLQQMQCILT SRQYARALLA ISDYFSRLRA LSSLWIARPR  240
PDMKSSVDPS VYS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03402A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807053.11e-117transcription factor HBP-1b(c1)-like
SwissprotQ6IVC21e-106TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBLA0A2T7EC781e-116A0A2T7EC78_9POAL; Uncharacterized protein
STRINGPavir.J05186.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2554523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.44e-92bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]