PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_03605A
Organism
Oropetium thomaeum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family G2-like
Protein Properties Length: 183aa    MW: 20582.2 Da    PI: 6.0307
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_03605AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.63.8e-101203655
                    G2-like 36 mkvkgLtlehvkSHLQkYRl 55
                               m+v+g+t++hvkSHLQkYRl
  Oropetium_20150105_03605A  1 MGVPGITIYHVKSHLQKYRL 20
                               99*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-9121IPR009057Homeodomain-like
PfamPF143793.0E-245398IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGVPGITIYH VKSHLQKYRL AKYIPESPAE GFKDEKKDSS DSLSNTDSAP GLQINEALKM  60
QMEVQKRLHE QLEVQRQLQL RIEAQGKYLQ KIIEEQQKLG GSVKASEDQK LPHSPPGLDD  120
YPDSVQPSPK KPRMDELSPN SSRDLTQREF ESHLIGPWDQ EICGKNICGI AFSVEDSKQT  180
QL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapOropetium_20150105_03605A
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961661.11e-113myb family transcription factor PHL7
SwissprotQ9SJW03e-48PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A2T7EC951e-112A0A2T7EC95_9POAL; Uncharacterized protein
STRINGSi022972m1e-112(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79133343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.23e-31G2-like family protein